RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RCAN1P53805 252 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 GALCP54803 685 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 SOX10P56693 466 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 SPATA31A1Q5TZJ5 1347 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 CERS5Q8N5B7 392 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 ANKS1AQ92625 1134 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 ANO3Q9BYT9 981 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 SERPINB13Q9UIV8 391 aa9.43□□□□□ -0.9
USP40-203ENST00000427112 SMCHD1A6NHR9 2005 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 FAM86B1E9PN63 330 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 KIF4AO95239 1232 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 ACSL3O95573 720 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 CLTAP09496 248 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 FGRP09769 529 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 FAM86B2P0C5J1 330 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 IFI35P80217 286 aaPredicted RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 SLC18A3Q16572 532 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 EAPPQ56P03 285 aaPredicted RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 SLC30A5Q8TAD4 765 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 ZC3H12CQ9C0D7 883 aaKnown RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 CTTNBP2NLQ9P2B4 639 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 NARFQ9UHQ1 456 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 STK38LQ9Y2H1 464 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 TCRBV7S2A1N4TA0A589 114 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 TARSL2A2RTX5 802 aaKnown RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 GOLGA8KD6RF30 607 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 FAM13AO94988 1023 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 FGFR1OPO95684 399 aaKnown RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 GCLMP48507 274 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 MRPL12P52815 198 aaKnown RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 RHBDL3P58872 404 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 TNNC1P63316 161 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 UAP1Q16222 522 aaPredicted RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 SYCP2LQ5T4T6 812 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 SLFN13Q68D06 897 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 PRR5LQ6MZQ0 368 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 CCDC121Q6ZUS5 278 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 EFCAB13Q8IY85 973 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 KIF2BQ8N4N8 673 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 USP38Q8NB14 1042 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 C18orf8Q96DM3 657 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 AK8Q96MA6 479 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 KIFC3Q9BVG8 833 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 KCNK9Q9NPC2 374 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 DDTLA6NHG4 134 aaPredicted RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 TCP10L2B9ZVM9 353 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 CTNND1O60716 968 aaKnown RBP9.42□□□□□ -0.9
USP40-203ENST00000427112 CAND2O75155 1236 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 PPP1R37O75864 691 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 CREB1P16220 341 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 ECE1P42892 770 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 GSTO1P78417 241 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 NAB2Q15742 525 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 C16orf86Q6ZW13 317 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 MYCBPAPQ8TBZ2 947 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 NYXQ9GZU5 481 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 THAP2Q9H0W7 228 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 KLHL11Q9NVR0 708 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 CEP72Q9P209 647 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 DNM3Q9UQ16 869 aa9.42□□□□□ -0.9
USP40-203ENST00000427112 NEBLO76041 1014 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 SERPINB2P05120 415 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 H2AFZP0C0S5 128 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 PON1P27169 355 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 DLG4P78352 724 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 SARNPP82979 210 aaKnown RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 GRAPQ13588 217 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 H2AFVQ71UI9 128 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 GRAPLQ8TC17 118 aaPredicted RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 DYDC1Q8WWB3 177 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 KRT35Q92764 455 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 ATP6V1G3Q96LB4 118 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 ELAC2Q9BQ52 826 aaKnown RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 HEMGNQ9BXL5 484 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 DHX36Q9H2U1 1008 aaKnown RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 TDRD3Q9H7E2 651 aaKnown RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 SH3GLB2Q9NR46 395 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 NAGPAQ9UK23 515 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 MYH3P11055 1940 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 NR3C1P04150 777 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 DRAP1Q14919 205 aaPredicted RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 TBC1D1Q86TI0 1168 aaPredicted RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 SLC35G2Q8TBE7 412 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 DYDC2Q96IM9 177 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 PURBQ96QR8 312 aaKnown RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 SPZ1Q9BXG8 430 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 AZI2Q9H6S1 392 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 ZNF287Q9HBT7 754 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 FBXO28Q9NVF7 368 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 LRP6O75581 1613 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 DDX3XO00571 662 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP40-203ENST00000427112 EXOC3O60645 756 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 TTLL1O95922 423 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 AFPP02771 609 aaKnown RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 PEX19P40855 299 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 MDH1P40925 334 aaKnown RBP9.41□□□□□ -0.9
USP40-203ENST00000427112 ARHGAP4P98171 946 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 ZNF543Q08ER8 600 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 PPP1R7Q15435 360 aa9.41□□□□□ -0.9
USP40-203ENST00000427112 PTGISQ16647 500 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms