RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TBCAO75347 108 aaKnown RBP11.23□□□□□ -0.61
CD44-207ENST00000425428 DGAT1O75907 488 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 RPLP2P05387 115 aaKnown RBP11.23□□□□□ -0.61
CD44-207ENST00000425428 ASGR1P07306 291 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 GJB1P08034 283 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 HOXD8P13378 290 aaPredicted RBP11.23□□□□□ -0.61
CD44-207ENST00000425428 LIG1P18858 919 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 AFMP43652 599 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 PSEN2P49810 448 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 NKX3-2P78367 333 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 PPFIA1Q13136 1202 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 LRRC41Q15345 812 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 MTERF2Q49AM1 385 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 FAM47CQ5HY64 1035 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 TMEM63BQ5T3F8 832 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 PPP4R3CPQ6ZMV5 832 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 GPBP1Q86WP2 473 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 SYT2Q8N9I0 419 aaPredicted RBP11.23□□□□□ -0.61
CD44-207ENST00000425428 MCPH1Q8NEM0 835 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 TCP11Q8WWU5 503 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 GOLPH3LQ9H4A5 285 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 CYP26B1Q9NR63 512 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 RMND1Q9NWS8 449 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 NOD1Q9Y239 953 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 NRCAMQ92823 1304 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 ADCY6O43306 1168 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 ADAMTS4O75173 837 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 SGPL1O95470 568 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 PURAQ00577 322 aaKnown RBP11.23□□□□□ -0.61
CD44-207ENST00000425428 MCM6Q14566 821 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 PLCB4Q15147 1175 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 MTFR1Q15390 333 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 LONRF3Q496Y0 759 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 PADI6Q6TGC4 694 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 CCDC65Q8IXS2 484 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 ELOA2Q8IYF1 753 aaPredicted RBP11.23□□□□□ -0.61
CD44-207ENST00000425428 DRC1Q96MC2 740 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 PNMA5Q96PV4 448 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 NIFKQ9BYG3 293 aaKnown RBP11.23□□□□□ -0.61
CD44-207ENST00000425428 MCOLN1Q9GZU1 580 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 ATP6V0A4Q9HBG4 840 aa11.23□□□□□ -0.61
CD44-207ENST00000425428 GTPBP6O43824 516 aaPredicted RBP11.22□□□□□ -0.61
CD44-207ENST00000425428 FAM13AO94988 1023 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 F2P00734 622 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 ACLYP53396 1101 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 ASIC1P78348 528 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 SNW1Q13573 536 aaKnown RBP11.22□□□□□ -0.61
CD44-207ENST00000425428 POSTNQ15063 836 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 UGCGQ16739 394 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 CAVIN1Q6NZI2 390 aaKnown RBP11.22□□□□□ -0.61
CD44-207ENST00000425428 CXCL17Q6UXB2 119 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 STXBP4Q6ZWJ1 553 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 TRIM50Q86XT4 487 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 ANKLE1Q8NAG6 615 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 KLHDC9Q8NEP7 349 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 ENGASEQ8NFI3 743 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 U2AF1L4Q8WU68 220 aaKnown RBP11.22□□□□□ -0.61
CD44-207ENST00000425428 SMARCE1Q969G3 411 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 IFT74Q96LB3 600 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 MTRQ99707 1265 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 C16orf70Q9BSU1 422 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 ZHX3Q9H4I2 956 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 STARD7Q9NQZ5 370 aa11.22□□□□□ -0.61
CD44-207ENST00000425428 C17orf102A2RUQ5 167 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 USO1O60763 962 aaKnown RBP11.21□□□□□ -0.61
CD44-207ENST00000425428 IDEP14735 1019 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 ABCD1P33897 745 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 RARRES1P49788 294 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 SMTNP53814 917 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 IGBP1P78318 339 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 CDC42EP1Q00587 391 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 PPP2R5AQ15172 486 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 E2F4Q16254 413 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 LHX8Q68G74 356 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 SASS6Q6UVJ0 657 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 ANO5Q75V66 913 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 RSPH3Q86UC2 560 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 METTL13Q8N6R0 699 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 SLC17A8Q8NDX2 589 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 GPT2Q8TD30 523 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 KIFAP3Q92845 792 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 PAGE5Q96GU1 130 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 MAP7D2Q96T17 732 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 CLSTN2Q9H4D0 955 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 EXOC1Q9NV70 894 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 KBTBD4Q9NVX7 518 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 OGDHLQ9ULD0 1010 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 COL4A3BPQ9Y5P4 624 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 MROH7Q68CQ1 1323 aa11.21□□□□□ -0.61
CD44-207ENST00000425428 EVPLQ92817 2033 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 ARID2Q68CP9 1835 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 A0A0U1RQG5 324 aaPredicted RBP11.21□□□□□ -0.62
CD44-207ENST00000425428 M0QZ92 97 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 ACTN4O43707 911 aaKnown RBP11.21□□□□□ -0.62
CD44-207ENST00000425428 ZNF862O60290 1169 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 KIF20AO95235 890 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 SMIM10L2AP0DMW4 78 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 SMIM10L2BP0DMW5 78 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 INSRRP14616 1297 aa11.21□□□□□ -0.62
CD44-207ENST00000425428 SLC12A3P55017 1021 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms