RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ERVK-5Q9HDB9 667 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 BRWD1Q9NSI6 2320 aa13.14□□□□□ -0.31
USP4-204ENST00000416417 PRPF3O43395 683 aaKnown RBP13.13□□□□□ -0.31
USP4-204ENST00000416417 EDIL3O43854 480 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 DTNBO60941 627 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 ITGB1P05556 798 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 RB1P06400 928 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 CYP3A4P08684 503 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 IRS1P35568 1242 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 TMEM31Q5JXX7 168 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 ADGRD2Q7Z7M1 963 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 REXO1Q8N1G1 1221 aaKnown RBP13.13□□□□□ -0.31
USP4-204ENST00000416417 KLHL23Q8NBE8 558 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 TNPO1Q92973 898 aaKnown RBP13.13□□□□□ -0.31
USP4-204ENST00000416417 OSMRQ99650 979 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 GLT8D2Q9H1C3 349 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 GABBR1Q9UBS5 961 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 LRFN2Q9ULH4 789 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 PLAGL2Q9UPG8 496 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 RALGAPA2Q2PPJ7 1873 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 CCDC196A0A1B0GTZ2 297 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 ESYT2A0FGR8 921 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 RPS6KA5O75582 802 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 C22orf31O95567 290 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 CLCN3P51790 818 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 RCAN1P53805 252 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 NTRK3Q16288 839 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 ZNF484Q5JVG2 852 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 FAM102BQ5T8I3 360 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 CMTR2Q8IYT2 770 aaKnown RBP13.13□□□□□ -0.31
USP4-204ENST00000416417 NME8Q8N427 588 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 METTL13Q8N6R0 699 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 ADAM2Q99965 735 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 FTHL17Q9BXU8 183 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 ST3GAL5Q9UNP4 418 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 SAMM50Q9Y512 469 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 SQORQ9Y6N5 450 aa13.13□□□□□ -0.31
USP4-204ENST00000416417 LOXHD1Q8IVV2 1947 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 KDM3AQ9Y4C1 1321 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 TTC3P53804 2025 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 TBKBP1A7MCY6 615 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 PI4K2BG5E9Z4 385 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 CHMP2AO43633 222 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 TBX10O75333 385 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 MMP1P03956 469 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 STAG3L1P0CL83 205 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 PDIA3P30101 505 aaKnown RBP13.12□□□□□ -0.31
USP4-204ENST00000416417 SLC26A2P50443 739 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 AKAP17AQ02040 695 aaKnown RBP13.12□□□□□ -0.31
USP4-204ENST00000416417 COL19A1Q14993 1142 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 UGCGQ16739 394 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 RBM23Q86U06 439 aaKnown RBP13.12□□□□□ -0.31
USP4-204ENST00000416417 LRRC71Q8N4P6 559 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 SPPL3Q8TCT6 385 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 LENG9Q96B70 501 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 CCDC136Q96JN2 1154 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 RWDD3Q9Y3V2 267 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 NCOR1O75376 2440 aa13.12□□□□□ -0.31
USP4-204ENST00000416417 KIAA1671Q9BY89 1806 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 COL1A2P08123 1366 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 NID2Q14112 1375 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 DENND3A2RUS2 1198 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 GPR32O75388 356 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 PSAPP07602 524 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 FGFR1P11362 822 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 SARSP49591 514 aaKnown RBP13.11□□□□□ -0.31
USP4-204ENST00000416417 TOB2Q14106 344 aaPredicted RBP13.11□□□□□ -0.31
USP4-204ENST00000416417 CTC1Q2NKJ3 1217 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 SPOUT1Q5T280 376 aaKnown RBP13.11□□□□□ -0.31
USP4-204ENST00000416417 ZNF746Q6NUN9 644 aaPredicted RBP13.11□□□□□ -0.31
USP4-204ENST00000416417 FAM228AQ86W67 206 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 POF1BQ8WVV4 589 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 LMAN2LQ9H0V9 348 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 TBC1D22BQ9NU19 505 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 TCEAL9Q9UHQ7 104 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 PCDHB7Q9Y5E2 793 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 PCDHA10Q9Y5I2 948 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 MAFBQ9Y5Q3 323 aaPredicted RBP13.11□□□□□ -0.31
USP4-204ENST00000416417 MYO7AQ13402 2215 aa13.11□□□□□ -0.31
USP4-204ENST00000416417 TMEM150BA6NC51 233 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 MSH4O15457 936 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 ZNF862O60290 1169 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 RPLP2P05387 115 aaKnown RBP13.1□□□□□ -0.31
USP4-204ENST00000416417 FGFR4P22455 802 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 GNA11P29992 359 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 RBM10P98175 930 aaKnown RBP13.1□□□□□ -0.31
USP4-204ENST00000416417 SETQ01105 290 aaPredicted RBP13.1□□□□□ -0.31
USP4-204ENST00000416417 ZP2Q05996 745 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 STK3Q13188 491 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 TEX2Q8IWB9 1127 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 CCDC12Q8WUD4 166 aaPredicted RBP13.1□□□□□ -0.31
USP4-204ENST00000416417 BBXQ8WY36 941 aaPredicted RBP13.1□□□□□ -0.31
USP4-204ENST00000416417 AIFM3Q96NN9 605 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 PLVAPQ9BX97 442 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 AGXT2Q9BYV1 514 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 AKT3Q9Y243 479 aa13.1□□□□□ -0.31
USP4-204ENST00000416417 C5orf42Q9H799 3197 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 C9IYK1 514 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 MBTPS2O43462 519 aa13.09□□□□□ -0.31
USP4-204ENST00000416417 GPR37L1O60883 481 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms