RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 RPLP2P05387 115 aaKnown RBP16.69■□□□□ 0.26
LIMS4-201ENST00000413601 CA3P07451 260 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 HMGN5P82970 282 aaKnown RBP16.69■□□□□ 0.26
LIMS4-201ENST00000413601 PRKCEQ02156 737 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 MKRN4PQ13434 485 aaPredicted RBP16.69■□□□□ 0.26
LIMS4-201ENST00000413601 FBXO47Q5MNV8 452 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 FAM117BQ6P1L5 589 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 HAS1Q92839 578 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 ZBED2Q9BTP6 218 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 PRDM12Q9H4Q4 367 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 NRBP2Q9NSY0 501 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 VAV3Q9UKW4 847 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 TRPV2Q9Y5S1 764 aa16.69■□□□□ 0.26
LIMS4-201ENST00000413601 NLRC5Q86WI3 1866 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 M0QZ92 97 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 EML1O00423 815 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 WNT7AO00755 349 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 TBX3O15119 743 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 PPP2R5CQ13362 524 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 SAFBQ15424 915 aaKnown RBP eCLIP16.68■□□□□ 0.26
LIMS4-201ENST00000413601 KIAA0319LQ8IZA0 1049 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 MYOCDQ8IZQ8 938 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 NME8Q8N427 588 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 METTL13Q8N6R0 699 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 FAM184AQ8NB25 1140 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 BANK1Q8NDB2 785 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 APBB2Q92870 758 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 CELF4Q9BZC1 486 aaKnown RBP16.68■□□□□ 0.26
LIMS4-201ENST00000413601 CEP131Q9UPN4 1083 aa16.68■□□□□ 0.26
LIMS4-201ENST00000413601 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.67■□□□□ 0.26
LIMS4-201ENST00000413601 ARHGEF15O94989 841 aa16.67■□□□□ 0.26
LIMS4-201ENST00000413601 GJB5O95377 273 aa16.67■□□□□ 0.26
LIMS4-201ENST00000413601 BAG4O95429 457 aaKnown RBP16.67■□□□□ 0.26
LIMS4-201ENST00000413601 AMHP03971 560 aa16.67■□□□□ 0.26
LIMS4-201ENST00000413601 FOSL2P15408 326 aa16.67■□□□□ 0.26
LIMS4-201ENST00000413601 TSHZ1Q6ZSZ6 1077 aa16.67■□□□□ 0.26
LIMS4-201ENST00000413601 FBXO18Q8NFZ0 1043 aa16.67■□□□□ 0.26
LIMS4-201ENST00000413601 TMX3Q96JJ7 454 aa16.67■□□□□ 0.26
LIMS4-201ENST00000413601 AGO3Q9H9G7 860 aaKnown RBP16.67■□□□□ 0.26
LIMS4-201ENST00000413601 LCHNA4D1U4 455 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 TMEM150BA6NC51 233 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 STBD1O95210 358 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 ATP2B1P20020 1258 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 CD52P31358 61 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 TTC3P53804 2025 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 TAP1Q03518 808 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 EFCAB12Q6NXP0 572 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 IL27Q8NEV9 243 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 PPP1R16BQ96T49 567 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 CDH23Q9H251 3354 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 CERS4Q9HA82 394 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 CDHR5Q9HBB8 845 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 SEPT9Q9UHD8 586 aaPredicted RBP16.66■□□□□ 0.26
LIMS4-201ENST00000413601 GINS2Q9Y248 185 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 GTF3C3Q9Y5Q9 886 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 SQORQ9Y6N5 450 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 KDM3AQ9Y4C1 1321 aa16.66■□□□□ 0.26
LIMS4-201ENST00000413601 COL4A4P53420 1690 aaPredicted RBP16.65■□□□□ 0.26
LIMS4-201ENST00000413601 MAGEB2O15479 319 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 UPP2O95045 317 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 VTNP04004 478 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 CLCN3P51790 818 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 PSMC5P62195 406 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 CALCRLQ16602 461 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 MTERF2Q49AM1 385 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 XKR3Q5GH77 459 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 NCAPH2Q6IBW4 605 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 SLFN12Q8IYM2 578 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 LRRC71Q8N4P6 559 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 RAD9AQ99638 391 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 SH2D3AQ9BRG2 576 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 NIFKQ9BYG3 293 aaKnown RBP16.65■□□□□ 0.26
LIMS4-201ENST00000413601 BACH2Q9BYV9 841 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 FOXP1Q9H334 677 aaPredicted RBP16.65■□□□□ 0.26
LIMS4-201ENST00000413601 PADI3Q9ULW8 664 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 COL6A3P12111 3177 aa16.65■□□□□ 0.26
LIMS4-201ENST00000413601 CHD9Q3L8U1 2897 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 DDX11L8A8MPP1 907 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 NEMFO60524 1076 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 MCM7P33993 719 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 QARSP47897 775 aaKnown RBP16.64■□□□□ 0.25
LIMS4-201ENST00000413601 SPIRE1Q08AE8 756 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 TARBP2Q15633 366 aaKnown RBP16.64■□□□□ 0.25
LIMS4-201ENST00000413601 TMEM266Q2M3C6 531 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 SPRED2Q7Z698 418 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 USP38Q8NB14 1042 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 MAFAQ8NHW3 353 aaPredicted RBP16.64■□□□□ 0.25
LIMS4-201ENST00000413601 TOP1MTQ969P6 601 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 GAS2L1Q99501 681 aaPredicted RBP16.64■□□□□ 0.25
LIMS4-201ENST00000413601 SUGCTQ9HAC7 445 aa16.64■□□□□ 0.25
LIMS4-201ENST00000413601 RALGAPA2Q2PPJ7 1873 aa16.63■□□□□ 0.25
LIMS4-201ENST00000413601 ENPP3O14638 875 aa16.63■□□□□ 0.25
LIMS4-201ENST00000413601 P4HBP07237 508 aaKnown RBP16.63■□□□□ 0.25
LIMS4-201ENST00000413601 TMOD1P28289 359 aa16.63■□□□□ 0.25
LIMS4-201ENST00000413601 TXKP42681 527 aa16.63■□□□□ 0.25
LIMS4-201ENST00000413601 MCM2P49736 904 aa16.63■□□□□ 0.25
LIMS4-201ENST00000413601 TBC1D8BQ0IIM8 1120 aa16.63■□□□□ 0.25
LIMS4-201ENST00000413601 PAK2Q13177 524 aa16.63■□□□□ 0.25
LIMS4-201ENST00000413601 GNL2Q13823 731 aaKnown RBP16.63■□□□□ 0.25
LIMS4-201ENST00000413601 ADGRE1Q14246 886 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms