RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 PGK1P00558 417 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 SSBP05455 408 aaKnown RBP eCLIP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 P4HBP07237 508 aaKnown RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 ZNF865P0CJ78 1059 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 RAG1P15918 1043 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 UBA1P22314 1058 aaKnown RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 SLC12A3P55017 1021 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 ASIC1P78348 528 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 KCNB1Q14721 858 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 CNNM4Q6P4Q7 775 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 KCNV1Q6PIU1 500 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 MAMDC4Q6UXC1 1216 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 EEPD1Q7L9B9 569 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 TPH2Q8IWU9 490 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 FBXO16Q8IX29 292 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 SYT2Q8N9I0 419 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 GIMAP8Q8ND71 665 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 BANK1Q8NDB2 785 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 CCDC47Q96A33 483 aaKnown RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 TRIM43Q96BQ3 446 aaPredicted RBP12.55□□□□□ -0.4
LINC00539-201ENST00000411525 FAM161BQ96MY7 647 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 BPIFA3Q9BQP9 254 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 CBX8Q9HC52 389 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 SLC9A2Q9UBY0 812 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 SAMM50Q9Y512 469 aa12.55□□□□□ -0.4
LINC00539-201ENST00000411525 EYSQ5T1H1 3165 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 TMEM265A0A087WTH1 108 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 DCDC2CA8MYV0 355 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 KIAA0355O15063 1070 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 KLRC4O43908 158 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 TGFB3P10600 412 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 CYP11B2P19099 503 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 BMP6P22004 513 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 PSMC6P62333 389 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 SP2Q02086 613 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 NEDD9Q14511 834 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 KMT5BQ4FZB7 885 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 C9orf50Q5SZB4 431 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 UNC13DQ70J99 1090 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 GPBP1Q86WP2 473 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 MLKLQ8NB16 471 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 NACC1Q96RE7 527 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 SEMA6BQ9H3T3 888 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 ZSWIM4Q9H7M6 989 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 SPC25Q9HBM1 224 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 VTA1Q9NP79 307 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 STARD7Q9NQZ5 370 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 TMEM39AQ9NV64 488 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 EXOC1Q9NV70 894 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 WRAP73Q9P2S5 460 aaPredicted RBP12.54□□□□□ -0.4
LINC00539-201ENST00000411525 MROH7Q68CQ1 1323 aa12.54□□□□□ -0.4
LINC00539-201ENST00000411525 ARID2Q68CP9 1835 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 WDR81Q562E7 1941 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 PQBP1O60828 265 aaKnown RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 ADAMTS4O75173 837 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 DUSP11O75319 330 aaKnown RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 RHOBTB3O94955 611 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 LYPLA2O95372 231 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 ARIH2O95376 493 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 PSAPP07602 524 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 QARSP47897 775 aaKnown RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 ACLYP53396 1101 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 ACTR2P61160 394 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 PSMC5P62195 406 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 SP4Q02446 784 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 FPGSQ05932 587 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 UVSSAQ2YD98 709 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 ZNF658Q5TYW1 1059 aaPredicted RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 MIS18BP1Q6P0N0 1132 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 CYFIP1Q7L576 1253 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 ANKRD33Q7Z3H0 272 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 LUZP1Q86V48 1076 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 PCSK9Q8NBP7 692 aaKnown RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 SCFD2Q8WU76 684 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 DDX12PQ92771 950 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 RNPC3Q96LT9 517 aaKnown RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 CDX2Q99626 313 aaPredicted RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 BHMT2Q9H2M3 363 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 ABHD16BQ9H3Z7 469 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 BMP2KQ9NSY1 1161 aaPredicted RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 DDX41Q9UJV9 622 aaKnown RBP12.53□□□□□ -0.4
LINC00539-201ENST00000411525 PCDHA10Q9Y5I2 948 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 IGSF9BQ9UPX0 1349 aa12.53□□□□□ -0.4
LINC00539-201ENST00000411525 PVALEFA0A1B0GWK0 134 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 SORBS3O60504 671 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 DKC1O60832 514 aaKnown RBP eCLIP12.52□□□□□ -0.41
LINC00539-201ENST00000411525 GGPS1O95749 300 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 SNAI1O95863 264 aaPredicted RBP12.52□□□□□ -0.41
LINC00539-201ENST00000411525 KRT18P05783 430 aaKnown RBP12.52□□□□□ -0.41
LINC00539-201ENST00000411525 SUPT20HL2P0C7V6 817 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 CST5P28325 142 aaPredicted RBP12.52□□□□□ -0.41
LINC00539-201ENST00000411525 TTLL4Q14679 1199 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 IQCB1Q15051 598 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 UGCGQ16739 394 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 CT47A1Q5JQC4 288 aaPredicted RBP12.52□□□□□ -0.41
LINC00539-201ENST00000411525 METTL7BQ6UX53 244 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 DYMQ7RTS9 669 aa12.52□□□□□ -0.41
LINC00539-201ENST00000411525 DHX40Q8IX18 779 aaKnown RBP12.52□□□□□ -0.41
LINC00539-201ENST00000411525 C4orf19Q8IY42 314 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms