RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 KRT40Q6A162 431 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 TSHZ1Q6ZSZ6 1077 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 ARNTL2Q8WYA1 636 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 WASF1Q92558 559 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 HAS1Q92839 578 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 APBB2Q92870 758 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 TNPO1Q92973 898 aaKnown RBP21.52■■□□□ 1.04
SF3A1-202ENST00000411423 TOP1MTQ969P6 601 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 CELF4Q9BZC1 486 aaKnown RBP21.52■■□□□ 1.04
SF3A1-202ENST00000411423 KCNMB3Q9NPA1 279 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 VAV3Q9UKW4 847 aa21.52■■□□□ 1.04
SF3A1-202ENST00000411423 COL4A4P53420 1690 aaPredicted RBP21.52■■□□□ 1.04
SF3A1-202ENST00000411423 LINC01553A4QN01 128 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 BTBD18B2RXH4 712 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 MMP1P03956 469 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 OATP04181 439 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 IGFBP4P22692 258 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 KRT2P35908 639 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 PRKCEQ02156 737 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 PPP4R3AQ6IN85 833 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 RTN4RL1Q86UN2 441 aaPredicted RBP21.51■■□□□ 1.03
SF3A1-202ENST00000411423 LINC01465Q8N7H1 131 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 TMEM40Q8WWA1 233 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 PPP1R16BQ96T49 567 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 TCEAL9Q9UHQ7 104 aa21.51■■□□□ 1.03
SF3A1-202ENST00000411423 COL4A6Q14031 1691 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 EVPLQ92817 2033 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 CCNT1O60563 726 aaKnown RBP21.5■■□□□ 1.03
SF3A1-202ENST00000411423 LPXNO60711 386 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 UPP2O95045 317 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 SFNP31947 248 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 JAK3P52333 1124 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 IER5Q5VY09 327 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 MIER3Q7Z3K6 550 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 POTEDQ86YR6 584 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.5■■□□□ 1.03
SF3A1-202ENST00000411423 SP7Q8TDD2 431 aaPredicted RBP21.5■■□□□ 1.03
SF3A1-202ENST00000411423 PPM1EQ8WY54 764 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 CEP89Q96ST8 783 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 TMX1Q9H3N1 280 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 KDM3AQ9Y4C1 1321 aa21.5■■□□□ 1.03
SF3A1-202ENST00000411423 MYO9BQ13459 2157 aa21.49■■□□□ 1.03
SF3A1-202ENST00000411423 ENPP3O14638 875 aa21.49■■□□□ 1.03
SF3A1-202ENST00000411423 CLCN3P51790 818 aa21.49■■□□□ 1.03
SF3A1-202ENST00000411423 GUCY1B3Q02153 619 aa21.49■■□□□ 1.03
SF3A1-202ENST00000411423 TMEM266Q2M3C6 531 aa21.49■■□□□ 1.03
SF3A1-202ENST00000411423 DIS3L2Q8IYB7 885 aaKnown RBP21.49■■□□□ 1.03
SF3A1-202ENST00000411423 NME8Q8N427 588 aa21.49■■□□□ 1.03
SF3A1-202ENST00000411423 SH2D3AQ9BRG2 576 aa21.49■■□□□ 1.03
SF3A1-202ENST00000411423 PADI3Q9ULW8 664 aa21.49■■□□□ 1.03
SF3A1-202ENST00000411423 VTNP04004 478 aa21.48■■□□□ 1.03
SF3A1-202ENST00000411423 TARBP2Q15633 366 aaKnown RBP21.48■■□□□ 1.03
SF3A1-202ENST00000411423 CCDC85BQ15834 202 aaPredicted RBP21.48■■□□□ 1.03
SF3A1-202ENST00000411423 LRRC71Q8N4P6 559 aa21.48■■□□□ 1.03
SF3A1-202ENST00000411423 BANK1Q8NDB2 785 aa21.48■■□□□ 1.03
SF3A1-202ENST00000411423 RDM1Q8NG50 284 aa21.48■■□□□ 1.03
SF3A1-202ENST00000411423 C17orf80Q9BSJ5 609 aa21.48■■□□□ 1.03
SF3A1-202ENST00000411423 WRAP73Q9P2S5 460 aaPredicted RBP21.48■■□□□ 1.03
SF3A1-202ENST00000411423 MTUS1Q9ULD2 1270 aa21.48■■□□□ 1.03
SF3A1-202ENST00000411423 NOC2LQ9Y3T9 749 aaKnown RBP21.48■■□□□ 1.03
SF3A1-202ENST00000411423 INSL6Q9Y581 213 aa21.48■■□□□ 1.03
SF3A1-202ENST00000411423 MTCH2Q9Y6C9 303 aa21.48■■□□□ 1.03
SF3A1-202ENST00000411423 MGEA5O60502 916 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 GPR32O75388 356 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 CD2BP2O95400 341 aaKnown RBP21.47■■□□□ 1.03
SF3A1-202ENST00000411423 RPLP2P05387 115 aaKnown RBP21.47■■□□□ 1.03
SF3A1-202ENST00000411423 GCFC2P16383 781 aaKnown RBP21.47■■□□□ 1.03
SF3A1-202ENST00000411423 ERVK-21P61565 698 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 GRB10Q13322 594 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 PPP2R5CQ13362 524 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 KIZQ2M2Z5 673 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 GDPD5Q8WTR4 605 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 FAM167AQ96KS9 214 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 RC3H2Q9HBD1 1191 aaKnown RBP21.47■■□□□ 1.03
SF3A1-202ENST00000411423 ERVK-5Q9HDB9 667 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 GINS2Q9Y248 185 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 SQORQ9Y6N5 450 aa21.47■■□□□ 1.03
SF3A1-202ENST00000411423 SPTBN5Q9NRC6 3674 aaKnown RBP21.47■■□□□ 1.03
SF3A1-202ENST00000411423 M0QZ92 97 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 SPIRE1Q08AE8 756 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 DRP2Q13474 957 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 EFCAB12Q6NXP0 572 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 CRIPAKQ8N1N5 446 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 METTL13Q8N6R0 699 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 ZNF668Q96K58 619 aaPredicted RBP21.46■■□□□ 1.03
SF3A1-202ENST00000411423 FAM20AQ96MK3 541 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 OSMRQ99650 979 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 SUGCTQ9HAC7 445 aa21.46■■□□□ 1.03
SF3A1-202ENST00000411423 XIRP2A4UGR9 3374 aa21.45■■□□□ 1.02
SF3A1-202ENST00000411423 VCANP13611 3396 aa21.45■■□□□ 1.02
SF3A1-202ENST00000411423 LINC00271P0C7V0 271 aa21.45■■□□□ 1.02
SF3A1-202ENST00000411423 POU3F3P20264 500 aaPredicted RBP21.45■■□□□ 1.02
SF3A1-202ENST00000411423 TGS1Q96RS0 853 aaKnown RBP21.45■■□□□ 1.02
SF3A1-202ENST00000411423 NIFKQ9BYG3 293 aaKnown RBP21.45■■□□□ 1.02
SF3A1-202ENST00000411423 ADAMTS10Q9H324 1103 aa21.45■■□□□ 1.02
SF3A1-202ENST00000411423 NRBP2Q9NSY0 501 aa21.45■■□□□ 1.02
SF3A1-202ENST00000411423 SEPT9Q9UHD8 586 aaPredicted RBP21.45■■□□□ 1.02
SF3A1-202ENST00000411423 CEP131Q9UPN4 1083 aa21.45■■□□□ 1.02
SF3A1-202ENST00000411423 TBX3O15119 743 aa21.44■■□□□ 1.02
SF3A1-202ENST00000411423 PAK2Q13177 524 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms