RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PSMD2Q13200 908 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 OR2W6PQ8NHA6 318 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 LENG9Q96B70 501 aa14.65□□□□□ -0.06
VPS54-203ENST00000409558 RPA1P27694 616 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 LDHDQ86WU2 507 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 LXNQ9BS40 222 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 BACH1O14867 736 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 PON1P27169 355 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 GCLMP48507 274 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 NPEPPSP55786 919 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 CCNI2Q6ZMN8 369 aaPredicted RBP14.64□□□□□ -0.07
VPS54-203ENST00000409558 HS2ST1Q7LGA3 356 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 TSEN2Q8NCE0 465 aaKnown RBP14.64□□□□□ -0.07
VPS54-203ENST00000409558 RBM46Q8TBY0 533 aaKnown RBP14.64□□□□□ -0.07
VPS54-203ENST00000409558 HPCAL4Q9UM19 191 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 NAV1Q8NEY1 1877 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 ATMINO43313 823 aaPredicted RBP14.64□□□□□ -0.07
VPS54-203ENST00000409558 SLITRK3O94933 977 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 ZCWPW2Q504Y3 356 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 PLA2G4FQ68DD2 849 aa14.64□□□□□ -0.07
VPS54-203ENST00000409558 CALUO43852 315 aaPredicted RBP14.63□□□□□ -0.07
VPS54-203ENST00000409558 INPP5BP32019 993 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 RPS6KA1Q15418 735 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 CFAP221Q4G0U5 840 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 IQCEQ6IPM2 695 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 AFAP1L1Q8TED9 768 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 GOPCQ9HD26 462 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 ASTN2O75129 1339 aaPredicted RBP14.63□□□□□ -0.07
VPS54-203ENST00000409558 GOLGA6CA6NDK9 693 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 IPO5O00410 1097 aaKnown RBP14.63□□□□□ -0.07
VPS54-203ENST00000409558 FLOT1O75955 427 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 GOLGA6DP0CG33 693 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 C2CD6Q53TS8 623 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 SYT2Q8N9I0 419 aaPredicted RBP14.63□□□□□ -0.07
VPS54-203ENST00000409558 UNC45AQ9H3U1 944 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 LUC7LQ9NQ29 371 aaKnown RBP14.63□□□□□ -0.07
VPS54-203ENST00000409558 GOLGA6AQ9NYA3 693 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 ZNF70Q9UC06 446 aaPredicted RBP14.63□□□□□ -0.07
VPS54-203ENST00000409558 ADAMTSL1Q8N6G6 1762 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 ZBTB7AO95365 584 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 SPIRE1Q08AE8 756 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 GBP6Q6ZN66 633 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 PEX26Q7Z412 305 aa14.63□□□□□ -0.07
VPS54-203ENST00000409558 CELF4Q9BZC1 486 aaKnown RBP14.63□□□□□ -0.07
VPS54-203ENST00000409558 DLG4P78352 724 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 LMBRD2Q68DH5 695 aaPredicted RBP14.62□□□□□ -0.07
VPS54-203ENST00000409558 SAAL1Q96ER3 474 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 PARVGQ9HBI0 331 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 SLC18A3Q16572 532 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 AADACL2Q6P093 401 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 MIER3Q7Z3K6 550 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 TXLNBQ8N3L3 684 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 ARL8AQ96BM9 186 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 PCDHA2Q9Y5H9 948 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 COL22A1Q8NFW1 1626 aaPredicted RBP14.62□□□□□ -0.07
VPS54-203ENST00000409558 A0A1W2PQJ5 194 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 HARSP12081 509 aaKnown RBP14.62□□□□□ -0.07
VPS54-203ENST00000409558 ITGA4P13612 1032 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 TCP1P17987 556 aaKnown RBP14.62□□□□□ -0.07
VPS54-203ENST00000409558 CBWD6Q4V339 395 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 EPC2Q52LR7 807 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 CBWD3Q5JTY5 395 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 CBWD5Q5RIA9 395 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 POP1Q99575 1024 aaKnown RBP14.62□□□□□ -0.07
VPS54-203ENST00000409558 DNAJC12Q9UKB3 198 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 PPP1R12BO60237 982 aaPredicted RBP14.62□□□□□ -0.07
VPS54-203ENST00000409558 FAM102BQ5T8I3 360 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 AEBP2Q6ZN18 517 aaPredicted RBP14.62□□□□□ -0.07
VPS54-203ENST00000409558 SAMD7Q7Z3H4 446 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 PALB2Q86YC2 1186 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 KAT5Q92993 513 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 TMOD4Q9NZQ9 345 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 CALCOCO1Q9P1Z2 691 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 FRMD4BQ9Y2L6 1034 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 SUGT1Q9Y2Z0 365 aa14.62□□□□□ -0.07
VPS54-203ENST00000409558 HIP1RO75146 1068 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 SREBF1P36956 1147 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 AP3B2Q13367 1082 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 TUBB2AQ13885 445 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 DRAP1Q14919 205 aaPredicted RBP14.61□□□□□ -0.07
VPS54-203ENST00000409558 DLK2Q6UY11 383 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 CNKSR1Q969H4 720 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 TUBB2BQ9BVA1 445 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 TAS2R14Q9NYV8 317 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 STIM2Q9P246 746 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 ASTN1O14525 1302 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 GRID2IPA4D2P6 1211 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 SLC16A4O15374 487 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 RPL13P26373 211 aaKnown RBP14.61□□□□□ -0.07
VPS54-203ENST00000409558 CEP55Q53EZ4 464 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 ZNF668Q96K58 619 aaPredicted RBP14.61□□□□□ -0.07
VPS54-203ENST00000409558 AMACRQ9UHK6 382 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 RGL2O15211 777 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 EVI5O60447 810 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 SYF2O95926 243 aaKnown RBP14.61□□□□□ -0.07
VPS54-203ENST00000409558 DLATP10515 647 aaKnown RBP14.61□□□□□ -0.07
VPS54-203ENST00000409558 PEX3P56589 373 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 OTOP1Q7RTM1 612 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 MYH7BA7E2Y1 1941 aa14.61□□□□□ -0.07
VPS54-203ENST00000409558 GJC1P36383 396 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms