RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 PDGFCQ9NRA1 345 aa15.56■□□□□ 0.08
GPNMB-203ENST00000409458 TAB2Q9NYJ8 693 aa15.56■□□□□ 0.08
GPNMB-203ENST00000409458 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.56■□□□□ 0.08
GPNMB-203ENST00000409458 IGKV6D-21A0A0A0MT36 114 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 TMEM88BA6NKF7 163 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 DKC1O60832 514 aaKnown RBP eCLIP15.55■□□□□ 0.08
GPNMB-203ENST00000409458 ECM2O94769 699 aaPredicted RBP15.55■□□□□ 0.08
GPNMB-203ENST00000409458 KIF20AO95235 890 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 GCNT3O95395 438 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 TPM3P06753 285 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 HOXD13P35453 343 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 COPB1P53618 953 aaKnown RBP15.55■□□□□ 0.08
GPNMB-203ENST00000409458 BMT2Q1RMZ1 405 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 TMEM63BQ5T3F8 832 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 CCDC62Q6P9F0 684 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 FOXR2Q6PJQ5 311 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 LRRC55Q6ZSA7 311 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 ZNF467Q7Z7K2 595 aaPredicted RBP15.55■□□□□ 0.08
GPNMB-203ENST00000409458 CCDC102AQ96A19 550 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 CNOT6LQ96LI5 555 aaKnown RBP15.55■□□□□ 0.08
GPNMB-203ENST00000409458 CTAGE1Q96RT6 745 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 ZIC5Q96T25 663 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 PCYT2Q99447 389 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 TSG101Q99816 390 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 ZNF302Q9NR11 478 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 SEL1LQ9UBV2 794 aa15.55■□□□□ 0.08
GPNMB-203ENST00000409458 SEPT9Q9UHD8 586 aaPredicted RBP15.55■□□□□ 0.08
GPNMB-203ENST00000409458 MAFBQ9Y5Q3 323 aaPredicted RBP15.55■□□□□ 0.08
GPNMB-203ENST00000409458 TEX33O43247 280 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 PRPF6O94906 941 aaKnown RBP15.54■□□□□ 0.08
GPNMB-203ENST00000409458 ATP4AP20648 1035 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 EEF1GP26641 437 aaKnown RBP15.54■□□□□ 0.08
GPNMB-203ENST00000409458 NMT1P30419 496 aaKnown RBP15.54■□□□□ 0.08
GPNMB-203ENST00000409458 SREBF2Q12772 1141 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 CELF3Q5SZQ8 465 aaKnown RBP15.54■□□□□ 0.08
GPNMB-203ENST00000409458 C17orf99Q6UX52 265 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 DPP9Q86TI2 863 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 CREBRFQ8IUR6 639 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 ANKRD20A12PQ8NF67 263 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 COPS5Q92905 334 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 MAML3Q96JK9 1138 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 CEP170P1Q96L14 293 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 MLXIPQ9HAP2 919 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 RTN4Q9NQC3 1192 aaKnown RBP15.54■□□□□ 0.08
GPNMB-203ENST00000409458 MAGEC2Q9UBF1 373 aaPredicted RBP15.54■□□□□ 0.08
GPNMB-203ENST00000409458 ZKSCAN5Q9Y2L8 839 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 LRRC10BA6NIK2 292 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 SLC15A5A6NIM6 579 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 TLR2O60603 784 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 INHBEP58166 350 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 ARID5BQ14865 1188 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 ODR4Q5SWX8 454 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 OTUD6AQ7L8S5 288 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 ZSCAN30Q86W11 494 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 FAM178BQ8IXR5 827 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 NPLOC4Q8TAT6 608 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 HHIPL1Q96JK4 782 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 KATNBL1Q9H079 304 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 VTA1Q9NP79 307 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 GPRC5CQ9NQ84 441 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.54■□□□□ 0.08
GPNMB-203ENST00000409458 IMPACTQ9P2X3 320 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 ZMYM2Q9UBW7 1377 aa15.54■□□□□ 0.08
GPNMB-203ENST00000409458 ESPNB1AK53 854 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 EIF3DO15371 548 aaKnown RBP eCLIP15.53■□□□□ 0.08
GPNMB-203ENST00000409458 OATP04181 439 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 TXNP10599 105 aaKnown RBP15.53■□□□□ 0.08
GPNMB-203ENST00000409458 TCF7P36402 384 aaPredicted RBP15.53■□□□□ 0.08
GPNMB-203ENST00000409458 KCNA1Q09470 495 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 GRM1Q13255 1194 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 TTLL4Q14679 1199 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 KNOP1Q1ED39 458 aaKnown RBP15.53■□□□□ 0.08
GPNMB-203ENST00000409458 HSDL1Q3SXM5 330 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 FILIP1LQ4L180 1135 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 XKR3Q5GH77 459 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 CYP4F22Q6NT55 531 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 TAPT1Q6NXT6 567 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 MAMDC4Q6UXC1 1216 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 FAM114A1Q8IWE2 563 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 ZNF507Q8TCN5 953 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 SCFD2Q8WU76 684 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 SEPT1Q8WYJ6 367 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 GPR20Q99678 358 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 TIPINQ9BVW5 301 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 VPS16Q9H269 839 aa15.53■□□□□ 0.08
GPNMB-203ENST00000409458 DIS3Q9Y2L1 958 aaKnown RBP15.53■□□□□ 0.08
GPNMB-203ENST00000409458 N4BP3O15049 544 aa15.52■□□□□ 0.08
GPNMB-203ENST00000409458 NKRFO15226 690 aaKnown RBP eCLIP15.52■□□□□ 0.08
GPNMB-203ENST00000409458 SNAI1O95863 264 aaPredicted RBP15.52■□□□□ 0.08
GPNMB-203ENST00000409458 PBX1P40424 430 aa15.52■□□□□ 0.08
GPNMB-203ENST00000409458 LRMPQ12912 555 aa15.52■□□□□ 0.08
GPNMB-203ENST00000409458 CRHR2Q13324 411 aa15.52■□□□□ 0.08
GPNMB-203ENST00000409458 ZC2HC1CQ53FD0 456 aaPredicted RBP15.52■□□□□ 0.08
GPNMB-203ENST00000409458 MORN1Q5T089 497 aa15.52■□□□□ 0.08
GPNMB-203ENST00000409458 FAM102BQ5T8I3 360 aa15.52■□□□□ 0.08
GPNMB-203ENST00000409458 PAXIP1Q6ZW49 1069 aaPredicted RBP15.52■□□□□ 0.08
GPNMB-203ENST00000409458 ZNF720Q7Z2F6 126 aa15.52■□□□□ 0.08
GPNMB-203ENST00000409458 ZC3H3Q8IXZ2 948 aaKnown RBP15.52■□□□□ 0.08
GPNMB-203ENST00000409458 AFAP1L1Q8TED9 768 aa15.52■□□□□ 0.08
GPNMB-203ENST00000409458 CACTINQ8WUQ7 758 aaKnown RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms