RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 F8W8V4 182 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 RALAP11233 206 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 DNAJB2P25686 324 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 PCYT1AP49585 367 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 PLCB3Q01970 1234 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 ACCSLQ4AC99 568 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 GKAP1Q5VSY0 366 aaPredicted RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 STKLD1Q8NE28 680 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 P2RX7Q99572 595 aaKnown RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 NYAP2Q9P242 653 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 GABBR1Q9UBS5 961 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 TMEM265A0A087WTH1 108 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 SYNJ2BP-COX16A0A087WUM0 186 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 IRF6O14896 467 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 OR52Z1P0C646 297 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 TECP42680 631 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 SKOR1P84550 965 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 PRPF4BQ13523 1007 aaKnown RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 RAPGEF1Q13905 1077 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 TRIM60Q495X7 471 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 SLFN12LQ6IEE8 588 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 DCUN1D2Q6PH85 259 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 MCPH1Q8NEM0 835 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 SSH3Q8TE77 659 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 ZNF296Q8WUU4 475 aaPredicted RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 PALMDQ9NP74 551 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 SLC38A7Q9NVC3 462 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 AKAP7Q9P0M2 348 aaPredicted RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 COX16Q9P0S2 106 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 SCINQ9Y6U3 715 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 FGAP02671 866 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 FAM160A1Q05DH4 1040 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 TMED1Q13445 227 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 ZNF568Q3ZCX4 644 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 FYB2Q5VWT5 728 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 TRIM50Q86XT4 487 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 DIS3L2Q8IYB7 885 aaKnown RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 TTC30BQ8N4P2 665 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 DDX19AQ9NUU7 478 aaKnown RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 GIMAP4Q9NUV9 329 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 BAIAP2L1Q9UHR4 511 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 OPHN1O60890 802 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 ZC3H11AO75152 810 aaKnown RBP eCLIP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 SYF2O95926 243 aaKnown RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 ATP5DP30049 168 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 HOXA10P31260 410 aaPredicted RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 BLVRAP53004 296 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 TERF1P54274 439 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 PLD1Q13393 1074 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 UBE2SQ16763 222 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 GPR142Q7Z601 462 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 OR6B3Q8NGW1 331 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 ARHGEF2Q92974 986 aaKnown RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 DCP1AQ9NPI6 582 aaPredicted RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.91□□□□□ -1.14
SCN9A-202ENST00000409435 DNAI1Q9UI46 699 aa7.91□□□□□ -1.14
SCN9A-202ENST00000409435 SLC27A2O14975 620 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 EGFRP00533 1210 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 PRPHP41219 470 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 INPP1P49441 399 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 CYP2J2P51589 502 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 STX1AQ16623 288 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 BMP2KLQ5H9B9 411 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 DGKHQ86XP1 1220 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 SPATA2LQ8IUW3 424 aaPredicted RBP7.9□□□□□ -1.14
SCN9A-202ENST00000409435 SELENOOQ9BVL4 669 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 C1orf112Q9NSG2 853 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 BCAP29Q9UHQ4 241 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 MEGF6O75095 1541 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 SETBP1Q9Y6X0 1596 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 ATP2A1O14983 1001 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 LLGL2Q6P1M3 1020 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 KIAA1524Q8TCG1 905 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 VTA1Q9NP79 307 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 POLE3Q9NRF9 147 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 DBNLQ9UJU6 430 aaKnown RBP7.9□□□□□ -1.14
SCN9A-202ENST00000409435 ODF2LQ9ULJ1 636 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 PPP1R9AQ9ULJ8 1098 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 TMEM110-MUSTN1A8MSY1 372 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 ZW10O43264 779 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 HIP1RO75146 1068 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 PSMD7P51665 324 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 PPM1LQ5SGD2 360 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 MAP3K21Q5TCX8 1036 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 APPL2Q8NEU8 664 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 TLE6Q9H808 572 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 CERS4Q9HA82 394 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 SUCLA2Q9P2R7 463 aaPredicted RBP7.9□□□□□ -1.14
SCN9A-202ENST00000409435 FZD1Q9UP38 647 aa7.9□□□□□ -1.14
SCN9A-202ENST00000409435 MRPS17Q9Y2R5 130 aaKnown RBP7.9□□□□□ -1.14
SCN9A-202ENST00000409435 PFDN6O15212 129 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 HBP1O60381 514 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 PARNO95453 639 aaKnown RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 MKRN4PQ13434 485 aaPredicted RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 FKBP1CQ5VVH2 108 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 LMBRD2Q68DH5 695 aaPredicted RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 KRT40Q6A162 431 aa7.9□□□□□ -1.15
SCN9A-202ENST00000409435 TTC19Q6DKK2 380 aaPredicted RBP7.9□□□□□ -1.15
SCN9A-202ENST00000409435 IQSEC1Q6DN90 963 aa7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms