RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 GAB4Q2WGN9 574 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 SLC35F1Q5T1Q4 408 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 LINC00116Q8NCU8 138 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 COPS5Q92905 334 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 UBE2FQ969M7 185 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 FAM122AQ96E09 287 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 C1orf159Q96HA4 380 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 GPATCH3Q96I76 525 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 FCRL3Q96P31 734 aaPredicted RBP6.32□□□□□ -1.4
CLK1-202ENST00000409403 SMC4Q9NTJ3 1288 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 FAM53CQ9NYF3 392 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 SFMBT1Q9UHJ3 866 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 CCNL1Q9UK58 526 aaPredicted RBP6.32□□□□□ -1.4
CLK1-202ENST00000409403 SNX11Q9Y5W9 270 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 SCN4AP35499 1836 aa6.32□□□□□ -1.4
CLK1-202ENST00000409403 RBBP6Q7Z6E9 1792 aaKnown RBP6.32□□□□□ -1.4
CLK1-202ENST00000409403 CCDC171Q6TFL3 1326 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 C2orf71A6NGG8 1288 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 IFNGR1P15260 489 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 IBSPP21815 317 aaPredicted RBP6.31□□□□□ -1.4
CLK1-202ENST00000409403 CASQ1P31415 396 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 CYP4F3Q08477 520 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 TM4SF20Q53R12 229 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 TRIM61Q5EBN2 209 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 TMPRSS7Q7RTY8 843 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 DHX37Q8IY37 1157 aaKnown RBP6.31□□□□□ -1.4
CLK1-202ENST00000409403 USHBP1Q8N6Y0 703 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 ERO1AQ96HE7 468 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 GPR101Q96P66 508 aaPredicted RBP6.31□□□□□ -1.4
CLK1-202ENST00000409403 TESK2Q96S53 571 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 SLC12A9Q9BXP2 914 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 SEMA3GQ9NS98 782 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 DUSP13Q9UII6 198 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 TCFL5Q9UL49 500 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.31□□□□□ -1.4
CLK1-202ENST00000409403 POLR3AO14802 1390 aaPredicted RBP6.31□□□□□ -1.4
CLK1-202ENST00000409403 NSD2O96028 1365 aa6.31□□□□□ -1.4
CLK1-202ENST00000409403 SSU72P8A0A1W2PR75 194 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 PRR19A6NJB7 356 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 WASH4PA8MWX3 477 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 IRS4O14654 1257 aaPredicted RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 IPO8O15397 1037 aaKnown RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 NEMFO60524 1076 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 ZNF205O95201 554 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 THBDP07204 575 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 SYPP08247 313 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 SEPHS1P49903 392 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 SAFB2Q14151 953 aaKnown RBP eCLIP6.3□□□□□ -1.4
CLK1-202ENST00000409403 RCSD1Q6JBY9 416 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 RNF111Q6ZNA4 994 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 CCDC91Q7Z6B0 441 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 CHD1LQ86WJ1 897 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 PTPRN2Q92932 1015 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 KIF1BPQ96EK5 621 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 CLUHP3Q96NS8 147 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 FOXP3Q9BZS1 431 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 BRINP2Q9C0B6 783 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 TTC12Q9H892 705 aaPredicted RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 ARGLU1Q9NWB6 273 aaPredicted RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 ZC3H7BQ9UGR2 993 aaKnown RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 NDOR1Q9UHB4 597 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 RSPH14Q9UHP6 348 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 WDR17Q8IZU2 1322 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 NUP155O75694 1391 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 ABCC11Q96J66 1382 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 A0A1B0GUL7 405 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 BLACEA4D250 179 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 ERICH4A6NGS2 130 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 ATP8B1O43520 1251 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 DHX16O60231 1041 aaKnown RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 EFCAB14O75071 495 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 TUBB4AP04350 444 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 KCNA3P22001 575 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 HNRNPH2P55795 449 aaKnown RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 TGFB2P61812 414 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 NTRK3Q16288 839 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 EEF1DP3Q658K8 133 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 USP53Q70EK8 1073 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 MAMDC2Q7Z304 686 aaPredicted RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.3□□□□□ -1.4
CLK1-202ENST00000409403 KSR1Q8IVT5 923 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 KREMEN2Q8NCW0 462 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 FRS2Q8WU20 508 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 RUNDC1Q96C34 613 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 DEF6Q9H4E7 631 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 GPRC5CQ9NQ84 441 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 CEP83Q9Y592 693 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 COL4A3BPQ9Y5P4 624 aa6.3□□□□□ -1.4
CLK1-202ENST00000409403 CEP290O15078 2479 aa6.29□□□□□ -1.4
CLK1-202ENST00000409403 DLEC1Q9Y238 1755 aa6.29□□□□□ -1.4
CLK1-202ENST00000409403 YTHDC2Q9H6S0 1430 aaKnown RBP6.29□□□□□ -1.4
CLK1-202ENST00000409403 hCG_2014768A0A024R1R8 64 aa6.29□□□□□ -1.4
CLK1-202ENST00000409403 IVLP07476 585 aa6.29□□□□□ -1.4
CLK1-202ENST00000409403 VIL1P09327 827 aaKnown RBP6.29□□□□□ -1.4
CLK1-202ENST00000409403 GSTM1P09488 218 aa6.29□□□□□ -1.4
CLK1-202ENST00000409403 FURINP09958 794 aa6.29□□□□□ -1.4
CLK1-202ENST00000409403 ENDOUP21128 410 aaKnown RBP6.29□□□□□ -1.4
CLK1-202ENST00000409403 RTP2Q5QGT7 225 aa6.29□□□□□ -1.4
CLK1-202ENST00000409403 ACBD5Q5T8D3 534 aaPredicted RBP6.29□□□□□ -1.4
CLK1-202ENST00000409403 TMEM132EQ6IEE7 984 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms