RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SREBF1P36956 1147 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 SLC26A2P50443 739 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 KRT76Q01546 638 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 CLUL1Q15846 466 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 ZNF713Q8N859 430 aaPredicted RBP32.4■■■□□ 2.78
HMGB1-205ENST00000399494 FAM217BQ9NTX9 383 aaPredicted RBP32.4■■■□□ 2.78
HMGB1-205ENST00000399494 PDRG1Q9NUG6 133 aa32.4■■■□□ 2.78
HMGB1-205ENST00000399494 CCDC196A0A1B0GTZ2 297 aa32.39■■■□□ 2.78
HMGB1-205ENST00000399494 LINC01565O15544 149 aa32.39■■■□□ 2.78
HMGB1-205ENST00000399494 CSPG5O95196 566 aa32.39■■■□□ 2.78
HMGB1-205ENST00000399494 NIPA1Q7RTP0 329 aa32.39■■■□□ 2.78
HMGB1-205ENST00000399494 LOXHD1Q8IVV2 1947 aa32.38■■■□□ 2.77
HMGB1-205ENST00000399494 TBX10O75333 385 aa32.38■■■□□ 2.77
HMGB1-205ENST00000399494 IRS1P35568 1242 aa32.38■■■□□ 2.77
HMGB1-205ENST00000399494 AP3B2Q13367 1082 aa32.38■■■□□ 2.77
HMGB1-205ENST00000399494 TMEM266Q2M3C6 531 aa32.38■■■□□ 2.77
HMGB1-205ENST00000399494 PAN2Q504Q3 1202 aaKnown RBP32.38■■■□□ 2.77
HMGB1-205ENST00000399494 KLHL23Q8NBE8 558 aa32.38■■■□□ 2.77
HMGB1-205ENST00000399494 GLT8D2Q9H1C3 349 aa32.38■■■□□ 2.77
HMGB1-205ENST00000399494 CDHR5Q9HBB8 845 aa32.38■■■□□ 2.77
HMGB1-205ENST00000399494 HBP1O60381 514 aa32.37■■■□□ 2.77
HMGB1-205ENST00000399494 CDC27P30260 824 aa32.37■■■□□ 2.77
HMGB1-205ENST00000399494 ZNF76P36508 570 aa32.37■■■□□ 2.77
HMGB1-205ENST00000399494 GATMP50440 423 aa32.37■■■□□ 2.77
HMGB1-205ENST00000399494 TOB2Q14106 344 aaPredicted RBP32.37■■■□□ 2.77
HMGB1-205ENST00000399494 KIAA0319LQ8IZA0 1049 aa32.37■■■□□ 2.77
HMGB1-205ENST00000399494 DDX39AO00148 427 aaKnown RBP32.36■■■□□ 2.77
HMGB1-205ENST00000399494 DHX15O43143 795 aaKnown RBP32.36■■■□□ 2.77
HMGB1-205ENST00000399494 ATP8B4Q8TF62 1192 aa32.36■■■□□ 2.77
HMGB1-205ENST00000399494 FAM86B1E9PN63 330 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 BACH1O14867 736 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 FAM86B2P0C5J1 330 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 NFX1Q12986 1120 aaKnown RBP32.35■■■□□ 2.77
HMGB1-205ENST00000399494 SMAD4Q13485 552 aaKnown RBP32.35■■■□□ 2.77
HMGB1-205ENST00000399494 CSPP1Q1MSJ5 1256 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 FAM160B1Q5W0V3 765 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 FAM43BQ6ZT52 329 aaPredicted RBP32.35■■■□□ 2.77
HMGB1-205ENST00000399494 CCDC60Q8IWA6 550 aaPredicted RBP32.35■■■□□ 2.77
HMGB1-205ENST00000399494 CRYGNQ8WXF5 182 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 UIMC1Q96RL1 719 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 ERVK-5Q9HDB9 667 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 CD207Q9UJ71 328 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 LRFN2Q9ULH4 789 aa32.35■■■□□ 2.77
HMGB1-205ENST00000399494 NOC2LQ9Y3T9 749 aaKnown RBP32.35■■■□□ 2.77
HMGB1-205ENST00000399494 C5orf42Q9H799 3197 aa32.34■■■□□ 2.77
HMGB1-205ENST00000399494 MGEA5O60502 916 aa32.34■■■□□ 2.77
HMGB1-205ENST00000399494 SARSP49591 514 aaKnown RBP32.34■■■□□ 2.77
HMGB1-205ENST00000399494 ADGRD2Q7Z7M1 963 aa32.34■■■□□ 2.77
HMGB1-205ENST00000399494 PLA2G4DQ86XP0 818 aa32.34■■■□□ 2.77
HMGB1-205ENST00000399494 POF1BQ8WVV4 589 aa32.34■■■□□ 2.77
HMGB1-205ENST00000399494 MSLNLQ96KJ4 702 aa32.34■■■□□ 2.77
HMGB1-205ENST00000399494 NID2Q14112 1375 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 KIAA1671Q9BY89 1806 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 IGLV3-22A0A075B6J6 115 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 ZBTB42B2RXF5 422 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 CYP3A4P08684 503 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 ATP4AP20648 1035 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 ADD1P35611 737 aaKnown RBP32.33■■■□□ 2.77
HMGB1-205ENST00000399494 ZNF484Q5JVG2 852 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 JAKMIP3Q5VZ66 844 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 SWSAP1Q6NVH7 229 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 TMEM40Q8WWA1 233 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 PPP2R3CQ969Q6 453 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 ZNF302Q9NR11 478 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 GINS2Q9Y248 185 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 PCDHB7Q9Y5E2 793 aa32.33■■■□□ 2.77
HMGB1-205ENST00000399494 COL1A2P08123 1366 aa32.32■■■□□ 2.77
HMGB1-205ENST00000399494 RPS6KA5O75582 802 aa32.32■■■□□ 2.76
HMGB1-205ENST00000399494 PDIA3P30101 505 aaKnown RBP32.32■■■□□ 2.76
HMGB1-205ENST00000399494 EVCP57679 992 aa32.32■■■□□ 2.76
HMGB1-205ENST00000399494 PDXDC2PQ6P474 469 aa32.32■■■□□ 2.76
HMGB1-205ENST00000399494 EFHBQ8N7U6 833 aa32.32■■■□□ 2.76
HMGB1-205ENST00000399494 POP1Q99575 1024 aaKnown RBP32.32■■■□□ 2.76
HMGB1-205ENST00000399494 RGS18Q9NS28 235 aa32.32■■■□□ 2.76
HMGB1-205ENST00000399494 CLEC1BQ9P126 229 aa32.32■■■□□ 2.76
HMGB1-205ENST00000399494 ADAMTS3O15072 1205 aa32.31■■■□□ 2.76
HMGB1-205ENST00000399494 EYA4O95677 639 aa32.31■■■□□ 2.76
HMGB1-205ENST00000399494 PFKFB3Q16875 520 aaPredicted RBP32.31■■■□□ 2.76
HMGB1-205ENST00000399494 MIS18BP1Q6P0N0 1132 aa32.31■■■□□ 2.76
HMGB1-205ENST00000399494 ADAM2Q99965 735 aa32.31■■■□□ 2.76
HMGB1-205ENST00000399494 LARP6Q9BRS8 491 aaKnown RBP32.31■■■□□ 2.76
HMGB1-205ENST00000399494 ST3GAL5Q9UNP4 418 aa32.31■■■□□ 2.76
HMGB1-205ENST00000399494 IPO5O00410 1097 aaKnown RBP32.3■■■□□ 2.76
HMGB1-205ENST00000399494 NDUFV1P49821 464 aa32.3■■■□□ 2.76
HMGB1-205ENST00000399494 CCT2P78371 535 aaKnown RBP32.3■■■□□ 2.76
HMGB1-205ENST00000399494 PPFIA3O75145 1194 aa32.29■■■□□ 2.76
HMGB1-205ENST00000399494 IBSPP21815 317 aaPredicted RBP32.29■■■□□ 2.76
HMGB1-205ENST00000399494 ZNF274Q96GC6 653 aaPredicted RBP32.29■■■□□ 2.76
HMGB1-205ENST00000399494 C1orf112Q9NSG2 853 aa32.29■■■□□ 2.76
HMGB1-205ENST00000399494 MAFBQ9Y5Q3 323 aaPredicted RBP32.29■■■□□ 2.76
HMGB1-205ENST00000399494 C9IYK1 514 aa32.28■■■□□ 2.76
HMGB1-205ENST00000399494 NRIP1P48552 1158 aa32.28■■■□□ 2.76
HMGB1-205ENST00000399494 ANKRD1Q15327 319 aa32.28■■■□□ 2.76
HMGB1-205ENST00000399494 HERC4Q5GLZ8 1057 aaPredicted RBP32.28■■■□□ 2.76
HMGB1-205ENST00000399494 ODR4Q5SWX8 454 aa32.28■■■□□ 2.76
HMGB1-205ENST00000399494 FAM102BQ5T8I3 360 aa32.28■■■□□ 2.76
HMGB1-205ENST00000399494 SLC24A5Q71RS6 500 aa32.28■■■□□ 2.76
HMGB1-205ENST00000399494 RBM23Q86U06 439 aaKnown RBP32.28■■■□□ 2.76
HMGB1-205ENST00000399494 RNF135Q8IUD6 432 aa32.28■■■□□ 2.76
HMGB1-205ENST00000399494 ZMYND12Q9H0C1 365 aa32.28■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms