RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 IQCA1LA6NCM1 817 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 SUSD5O60279 629 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 FBXO21O94952 628 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 TYRP1P17643 537 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 POU3F2P20265 443 aaPredicted RBP5.02□□□□□ -1.61
HMGB1-204ENST00000399489 EFEMP1Q12805 493 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 GALEQ14376 348 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 COBLL1Q53SF7 1204 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 IQCEQ6IPM2 695 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 FAM124AQ86V42 546 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 IFNL2Q8IZJ0 200 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 BVESQ8NE79 360 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 PPHLN1Q8NEY8 458 aaKnown RBP5.02□□□□□ -1.61
HMGB1-204ENST00000399489 SKA1Q96BD8 255 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 SCLT1Q96NL6 688 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 MMP19Q99542 508 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 EPN3Q9H201 632 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 C9orf78Q9NZ63 289 aaPredicted RBP5.02□□□□□ -1.61
HMGB1-204ENST00000399489 CLEC1BQ9P126 229 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 ASAP1Q9ULH1 1129 aa5.02□□□□□ -1.61
HMGB1-204ENST00000399489 LUC7L2Q9Y383 392 aaKnown RBP5.02□□□□□ -1.61
HMGB1-204ENST00000399489 MORC2Q9Y6X9 1032 aaPredicted RBP5.02□□□□□ -1.61
HMGB1-204ENST00000399489 C7orf72A4D263 438 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 PRSS47A8MTI9 375 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 MYO1BO43795 1136 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 PRICKLE3O43900 615 aaPredicted RBP5.01□□□□□ -1.61
HMGB1-204ENST00000399489 DNAJC8O75937 253 aaPredicted RBP5.01□□□□□ -1.61
HMGB1-204ENST00000399489 NPTXRO95502 500 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 NTRK1P04629 796 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 VDRP11473 427 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 CNR2P34972 360 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 GPSM2P81274 684 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 TMPRSS15P98073 1019 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 KIAA2012Q0VF49 1180 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 SCRN1Q12765 414 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 STK3Q13188 491 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 GRM3Q14832 879 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 SEPT7Q16181 437 aaKnown RBP5.01□□□□□ -1.61
HMGB1-204ENST00000399489 ZXDCQ2QGD7 858 aaPredicted RBP5.01□□□□□ -1.61
HMGB1-204ENST00000399489 MINDY4Q4G0A6 757 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 FAM209AQ5JX71 171 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 HYIQ5T013 277 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 ETV3LQ6ZN32 361 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 SEC14L1Q92503 715 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 ERP27Q96DN0 273 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 MPP4Q96JB8 637 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 GPR101Q96P66 508 aaPredicted RBP5.01□□□□□ -1.61
HMGB1-204ENST00000399489 DHRS4Q9BTZ2 278 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 MRPL4Q9BYD3 311 aaKnown RBP5.01□□□□□ -1.61
HMGB1-204ENST00000399489 TCF7L1Q9HCS4 588 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 ARHGEF4Q9NR80 690 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 MARCH2Q9P0N8 246 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 POLG2Q9UHN1 485 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 PHTF1Q9UMS5 762 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 PLA2G2DQ9UNK4 145 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 EMC9Q9Y3B6 208 aa5.01□□□□□ -1.61
HMGB1-204ENST00000399489 CT47B1P0C2W7 299 aaPredicted RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 PLS3P13797 630 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 RPL11P62913 178 aaKnown RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 CHAF1AQ13111 956 aaPredicted RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 CYB5RLQ6IPT4 315 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 XRRA1Q6P2D8 792 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 BORAQ6PGQ7 559 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 MMS22LQ6ZRQ5 1243 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 EPM2AIP1Q7L775 607 aaPredicted RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 ZNF354CQ86Y25 554 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 AHI1Q8N157 1196 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 TTLL6Q8N841 843 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 SNRNP27Q8WVK2 155 aaKnown RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 RSPH9Q9H1X1 276 aaPredicted RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 BTG4Q9NY30 223 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 CLIC5Q9NZA1 410 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 FBXO2Q9UK22 296 aaPredicted RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 RABGAP1Q9Y3P9 1069 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 PMM2O15305 246 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 NOBOXO60393 691 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 CALRP27797 417 aaKnown RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 RENBPP51606 427 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 GTF2A2P52657 109 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 PCBP1Q15365 356 aaKnown RBP eCLIP5□□□□□ -1.61
HMGB1-204ENST00000399489 PUM3Q15397 648 aaKnown RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 PTPN21Q16825 1174 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 LONRF1Q17RB8 773 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 ABCB5Q2M3G0 1257 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 YOD1Q5VVQ6 348 aaPredicted RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 LVRNQ6Q4G3 990 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 SUGP1Q8IWZ8 645 aaKnown RBP5□□□□□ -1.61
HMGB1-204ENST00000399489 NOX5Q96PH1 765 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 TTC1Q99614 292 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 DDX21Q9NR30 783 aaKnown RBP eCLIP5□□□□□ -1.61
HMGB1-204ENST00000399489 CYP26B1Q9NR63 512 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 KLHL11Q9NVR0 708 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 SAGE1Q9NXZ1 904 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 PGAP2Q9UHJ9 254 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 FAM50BQ9Y247 325 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 DGKBQ9Y6T7 804 aa5□□□□□ -1.61
HMGB1-204ENST00000399489 NEMP1O14524 444 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 PPP1R11O60927 126 aaPredicted RBP4.99□□□□□ -1.61
HMGB1-204ENST00000399489 ECE1P42892 770 aa4.99□□□□□ -1.61
HMGB1-204ENST00000399489 SMAD4Q13485 552 aaKnown RBP4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms