RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CCDC181Q5TID7 509 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 NAIF1Q69YI7 327 aaPredicted RBP12.19□□□□□ -0.46
CUX1-204ENST00000393824 ARMC9Q7Z3E5 817 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 HOOK2Q96ED9 719 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 MTRQ99707 1265 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 BLZF1Q9H2G9 400 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 RIOX1Q9H6W3 641 aa12.19□□□□□ -0.46
CUX1-204ENST00000393824 RASSF10A6NK89 507 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 TRAPPC3O43617 180 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 FAM153BP0C7A2 387 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 MATR3P43243 847 aaKnown RBP eCLIP12.18□□□□□ -0.465e-7■■■■□ 22.9
CUX1-204ENST00000393824 CARSP49589 748 aaKnown RBP12.18□□□□□ -0.46
CUX1-204ENST00000393824 MRPS25P82663 173 aaKnown RBP12.18□□□□□ -0.46
CUX1-204ENST00000393824 TBC1D8BQ0IIM8 1120 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 PTGDRQ13258 359 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 PFKFB3Q16875 520 aaPredicted RBP12.18□□□□□ -0.46
CUX1-204ENST00000393824 FAM153CQ494X1 144 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 ADSSL1Q8N142 457 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 WHAMMQ8TF30 809 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.18□□□□□ -0.463e-7■■■■■ 94
CUX1-204ENST00000393824 STAMQ92783 540 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 SPZ1Q9BXG8 430 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 EMILIN3Q9NT22 766 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 LRWD1Q9UFC0 647 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 FAM153AQ9UHL3 310 aa12.18□□□□□ -0.46
CUX1-204ENST00000393824 OTOFQ9HC10 1997 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 A0A1W2PQJ5 194 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 DNAJC8O75937 253 aaPredicted RBP12.17□□□□□ -0.46
CUX1-204ENST00000393824 LCA5LO95447 670 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 GLI1P08151 1106 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 GHRP10912 638 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 SCG2P13521 617 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 TRIM21P19474 475 aaKnown RBP12.17□□□□□ -0.46
CUX1-204ENST00000393824 HNRNPH3P31942 346 aaKnown RBP12.17□□□□□ -0.46
CUX1-204ENST00000393824 SCTRP47872 440 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 SPRED3Q2MJR0 410 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 ASPRV1Q53RT3 343 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 NFRKBQ6P4R8 1299 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 TMBIM4Q9HC24 238 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 ARHGEF10LQ9HCE6 1279 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 RBM12Q9NTZ6 932 aaKnown RBP12.17□□□□□ -0.46
CUX1-204ENST00000393824 HAUS2Q9NVX0 235 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 SLC12A6Q9UHW9 1150 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 NFU1Q9UMS0 254 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 PAPPA2Q9BXP8 1791 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 MYH6P13533 1939 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 SMCHD1A6NHR9 2005 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 WNT7AO00755 349 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 BMP3P12645 472 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 ZNF174Q15697 407 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 CDC37Q16543 378 aaPredicted RBP12.17□□□□□ -0.46
CUX1-204ENST00000393824 LRIG3Q6UXM1 1119 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 HEATR3Q7Z4Q2 680 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 RASGRP4Q8TDF6 673 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 SMCR8Q8TEV9 937 aaPredicted RBP12.17□□□□□ -0.46
CUX1-204ENST00000393824 COA7Q96BR5 231 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 GMCL1Q96IK5 515 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 WNK4Q96J92 1243 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 CCDC42Q96M95 316 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 SCLT1Q96NL6 688 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 ALS2CR12Q96Q35 445 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 ELP3Q9H9T3 547 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 POLD4Q9HCU8 107 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 EXOC1Q9NV70 894 aa12.17□□□□□ -0.46
CUX1-204ENST00000393824 HMGCS2P54868 508 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 CRELD2Q6UXH1 353 aaPredicted RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 EIF1ADQ8N9N8 165 aaKnown RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 ARMC2Q8NEN0 867 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 RASSF8Q8NHQ8 419 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 RSRC1Q96IZ7 334 aaKnown RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 SEC16BQ96JE7 1060 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 KDM4CQ9H3R0 1056 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 EBF2Q9HAK2 575 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 SLC24A3Q9HC58 644 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 PPANQ9NQ55 473 aaKnown RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 PCDHA13Q9Y5I0 950 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 STXBP3O00186 592 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 PAEPP09466 180 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 VCAM1P19320 739 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 GBP2P32456 591 aaPredicted RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 HSPA9P38646 679 aaKnown RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 PPP1R2P41236 205 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 E2F5Q15329 346 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 CFAP221Q4G0U5 840 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 GPATCH4Q5T3I0 446 aaKnown RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 ZNF280CQ8ND82 737 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 ZNF483Q8TF39 744 aaPredicted RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 DCAF4Q8WV16 495 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 TLR10Q9BXR5 811 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 IFIH1Q9BYX4 1025 aaKnown RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 EPB41L5Q9HCM4 733 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 PLCB1Q9NQ66 1216 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 MAGEC2Q9UBF1 373 aaPredicted RBP12.16□□□□□ -0.46
CUX1-204ENST00000393824 TSKSQ9UJT2 592 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 PLAGL2Q9UPG8 496 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 GDAQ9Y2T3 454 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 DOCK1Q14185 1865 aa12.16□□□□□ -0.46
CUX1-204ENST00000393824 PHIPQ8WWQ0 1821 aa12.15□□□□□ -0.46
CUX1-204ENST00000393824 TRIM49BA6NDI0 452 aa12.15□□□□□ -0.46
CUX1-204ENST00000393824 PJA2O43164 708 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms