RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 VWA5AO00534 786 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 EIF2AK2P19525 551 aaKnown RBP8.91□□□□□ -0.98
LIMS1-203ENST00000393310 PUM1Q14671 1186 aaKnown RBP eCLIP8.91□□□□□ -0.98
LIMS1-203ENST00000393310 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.91□□□□□ -0.98
LIMS1-203ENST00000393310 CCDC84Q86UT8 332 aaPredicted RBP8.91□□□□□ -0.98
LIMS1-203ENST00000393310 TTC30BQ8N4P2 665 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 ZNF512BQ96KM6 892 aaPredicted RBP8.91□□□□□ -0.98
LIMS1-203ENST00000393310 ZNF396Q96N95 335 aaPredicted RBP8.91□□□□□ -0.98
LIMS1-203ENST00000393310 MAN2B1O00754 1011 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 GPAA1O43292 621 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 NDUFB10O96000 172 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 DYNLL1P63167 89 aaKnown RBP8.91□□□□□ -0.98
LIMS1-203ENST00000393310 PDCD7Q8N8D1 485 aaKnown RBP8.91□□□□□ -0.98
LIMS1-203ENST00000393310 NEDD1Q8NHV4 660 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 VMP1Q96GC9 406 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 BCAS3Q9H6U6 928 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 FAM198AQ9UFP1 575 aa8.91□□□□□ -0.98
LIMS1-203ENST00000393310 ZFXP17010 805 aaPredicted RBP8.9□□□□□ -0.98
LIMS1-203ENST00000393310 ATF7P17544 494 aaPredicted RBP8.9□□□□□ -0.98
LIMS1-203ENST00000393310 KPNA1P52294 538 aaPredicted RBP8.9□□□□□ -0.98
LIMS1-203ENST00000393310 ACBD5Q5T8D3 534 aaPredicted RBP8.9□□□□□ -0.98
LIMS1-203ENST00000393310 KBTBD3Q8NAB2 608 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 KLHDC4Q8TBB5 520 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 CDCA7LQ96GN5 454 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 TRPV2Q9Y5S1 764 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 PEAK1Q9H792 1746 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 H7C4K7 107 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 HBP1O60381 514 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 KRT38O76015 456 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 ATP5JP18859 108 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 ITIH3Q06033 890 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 GOLGA8FQ08AF8 430 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 GOLGA8DPQ0D2H9 430 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 PTGDRQ13258 359 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 LRRC69Q6ZNQ3 347 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 HEATR3Q7Z4Q2 680 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 RABEPKQ7Z6M1 372 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 TRIM42Q8IWZ5 723 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 SREK1Q8WXA9 508 aaKnown RBP8.9□□□□□ -0.98
LIMS1-203ENST00000393310 PIBF1Q8WXW3 757 aa8.9□□□□□ -0.98
LIMS1-203ENST00000393310 AASDHQ4L235 1098 aaPredicted RBP8.9□□□□□ -0.99
LIMS1-203ENST00000393310 IFNL3Q8IZI9 196 aa8.9□□□□□ -0.99
LIMS1-203ENST00000393310 FAM81BQ96LP2 452 aa8.9□□□□□ -0.99
LIMS1-203ENST00000393310 PTPN18Q99952 460 aa8.9□□□□□ -0.99
LIMS1-203ENST00000393310 SUGCTQ9HAC7 445 aa8.9□□□□□ -0.99
LIMS1-203ENST00000393310 ODF2LQ9ULJ1 636 aa8.9□□□□□ -0.99
LIMS1-203ENST00000393310 PAIP2BQ9ULR5 123 aaKnown RBP8.9□□□□□ -0.99
LIMS1-203ENST00000393310 INPP5FQ9Y2H2 1132 aa8.9□□□□□ -0.99
LIMS1-203ENST00000393310 ICAM1P05362 532 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 FERP16591 822 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 AK2P54819 239 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 DLK2Q6UY11 383 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 DIS3LQ8TF46 1054 aaKnown RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 MEIS3Q99687 375 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 MRPL17Q9NRX2 175 aaKnown RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 RBPJLQ9UBG7 517 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 NOC2LQ9Y3T9 749 aaKnown RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 CA3P07451 260 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 MMP3P08254 477 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 TPP2P29144 1249 aaPredicted RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 POU5F1Q01860 360 aaKnown RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 KIAA0753Q2KHM9 967 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 SH2D4BQ5SQS7 431 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 CFAP58Q5T655 872 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 ISM2Q6H9L7 571 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 NPAS4Q8IUM7 802 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 MRPL38Q96DV4 380 aaKnown RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 GBP3Q9H0R5 595 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 PORCNQ9H237 461 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 ALDH8A1Q9H2A2 487 aaPredicted RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 TOPORSQ9NS56 1045 aaPredicted RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 TMEM260Q9NX78 707 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 CCDC192P0DO97 292 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 ADORA1P30542 326 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 PHKA2P46019 1235 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 PDE6CP51160 858 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 ADCY7P51828 1080 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 KIF11P52732 1056 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 KRT76Q01546 638 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 DNAJC21Q5F1R6 531 aaKnown RBP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 PRAMEF19Q5SWL8 479 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 PRR23BQ6ZRT6 265 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 LRRC43Q8N309 656 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 TTC16Q8NEE8 873 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 QSER1Q2KHR3 1735 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 TADA2AO75478 443 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 CYBAP13498 195 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 SCG2P13521 617 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 ALDH1A3P47895 512 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 SBK1Q52WX2 424 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 MYSM1Q5VVJ2 828 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 HOOK3Q86VS8 718 aa8.89□□□□□ -0.99
LIMS1-203ENST00000393310 DDX42Q86XP3 938 aaKnown RBP eCLIP8.89□□□□□ -0.99
LIMS1-203ENST00000393310 SNAP23O00161 211 aa8.88□□□□□ -0.99
LIMS1-203ENST00000393310 ALDH2P05091 517 aa8.88□□□□□ -0.99
LIMS1-203ENST00000393310 PRR29P0C7W0 189 aa8.88□□□□□ -0.99
LIMS1-203ENST00000393310 MX1P20591 662 aa8.88□□□□□ -0.99
LIMS1-203ENST00000393310 CST5P28325 142 aaPredicted RBP8.88□□□□□ -0.99
LIMS1-203ENST00000393310 SMTNP53814 917 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms