RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 SYNGAP1Q96PV0 1343 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 SLC4A1P02730 911 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 BCAMP50895 628 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 AOC3Q16853 763 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 ZNF280CQ8ND82 737 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 TMOD4Q9NZQ9 345 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 ARHGAP26Q9UNA1 814 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 MRPL47Q9HD33 250 aaKnown RBP17.3■□□□□ 0.36
SHANK1-204ENST00000391814 RNF103-CHMP3A0A140T963 221 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 LGALS16A8MUM7 142 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 POLA2Q14181 598 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 CEP55Q53EZ4 464 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 RNF26Q9BY78 433 aaPredicted RBP17.3■□□□□ 0.36
SHANK1-204ENST00000391814 EMILIN3Q9NT22 766 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 SFMBT1Q9UHJ3 866 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 KCNQ3O43525 872 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 CTCFP49711 727 aaPredicted RBP17.3■□□□□ 0.36
SHANK1-204ENST00000391814 THAP11Q96EK4 314 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.3■□□□□ 0.36
SHANK1-204ENST00000391814 ALG13Q9NP73 1137 aaKnown RBP17.3■□□□□ 0.36
SHANK1-204ENST00000391814 GGA1Q9UJY5 639 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 MAST3O60307 1309 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 SOS2Q07890 1332 aaPredicted RBP17.3■□□□□ 0.36
SHANK1-204ENST00000391814 POLR2MP0CAP2 368 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 CNGA3Q16281 694 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 DNAJC9Q8WXX5 260 aa17.3■□□□□ 0.36
SHANK1-204ENST00000391814 MYL1P05976 194 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 KPNA2P52292 529 aaKnown RBP17.29■□□□□ 0.36
SHANK1-204ENST00000391814 LRRC31Q6UY01 552 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 ACCSQ96QU6 501 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 PSD3Q9NYI0 1048 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 DLGAP2Q9P1A6 1054 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 ARL2BPQ9Y2Y0 163 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 GAP43P17677 238 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 GPHNQ9NQX3 736 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-204ENST00000391814 RAP1GDS1P52306 607 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 NR1H3Q13133 447 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 TOB2Q14106 344 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-204ENST00000391814 TBC1D23Q9NUY8 699 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 GTSE1Q9NYZ3 720 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 KIF17Q9P2E2 1029 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 HESX1Q9UBX0 185 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 TRIM33Q9UPN9 1127 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 ARL4CP56559 192 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 CCDC85BQ15834 202 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-204ENST00000391814 FMR1NBQ8N0W7 255 aaPredicted RBP17.29■□□□□ 0.36
SHANK1-204ENST00000391814 CARSP49589 748 aaKnown RBP17.29■□□□□ 0.36
SHANK1-204ENST00000391814 TBCKQ8TEA7 893 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 CYFIP2Q96F07 1278 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 SH3TC1Q8TE82 1336 aa17.29■□□□□ 0.36
SHANK1-204ENST00000391814 HIC1Q14526 733 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 NCAPHQ15003 741 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 PLEKHF1Q96S99 279 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 PICK1Q9NRD5 415 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 TTC7AQ9ULT0 858 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-204ENST00000391814 RTCBQ9Y3I0 505 aaKnown RBP17.28■□□□□ 0.36
SHANK1-204ENST00000391814 SPDYE2BA6NHP3 402 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 SPDYE6P0CI01 402 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 MRPL28Q13084 256 aaKnown RBP17.28■□□□□ 0.36
SHANK1-204ENST00000391814 ADCK1Q86TW2 530 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 VIPAS39Q9H9C1 493 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 PSMD7P51665 324 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 TEDDM1Q5T9Z0 273 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 E4F1Q66K89 784 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-204ENST00000391814 BTNL9Q6UXG8 535 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 GJB4Q9NTQ9 266 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 KDSRQ06136 332 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 MCF2L2Q86YR7 1114 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 MARCH10Q8NA82 808 aaPredicted RBP17.28■□□□□ 0.36
SHANK1-204ENST00000391814 SLC38A10Q9HBR0 1119 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 NOD2Q9HC29 1040 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 ZDHHC9Q9Y397 364 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 LRRC8EQ6NSJ5 796 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 PDIK1LQ8N165 341 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 DACH2Q96NX9 599 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 NPHS2Q9NP85 383 aa17.28■□□□□ 0.36
SHANK1-204ENST00000391814 LRRIQ4A6NIV6 560 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 WBP4O75554 376 aaKnown RBP17.27■□□□□ 0.36
SHANK1-204ENST00000391814 TJP3O95049 919 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 MAP4P27816 1152 aaKnown RBP17.27■□□□□ 0.36
SHANK1-204ENST00000391814 KDM5CP41229 1560 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 DAB2IPQ5VWQ8 1189 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 CDC26Q8NHZ8 85 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 GTPBP10A4D1E9 387 aaKnown RBP17.27■□□□□ 0.36
SHANK1-204ENST00000391814 EFTUD2Q15029 972 aaKnown RBP eCLIP17.27■□□□□ 0.36
SHANK1-204ENST00000391814 KLHL38Q2WGJ6 581 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 ACBD5Q5T8D3 534 aaPredicted RBP17.27■□□□□ 0.36
SHANK1-204ENST00000391814 GRAMD1AQ96CP6 724 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 SLC13A1Q9BZW2 595 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 KRT8P05787 483 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 KRT4P19013 534 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 ATP2B4P23634 1241 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 PRCPP42785 496 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 UBXN2AP68543 259 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 SIRT2Q8IXJ6 389 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 CCDC24Q8N4L8 307 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 PPP1R36Q96LQ0 422 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 IGF2BP3O00425 579 aaKnown RBP eCLIP17.27■□□□□ 0.36
SHANK1-204ENST00000391814 KRT37O76014 449 aa17.27■□□□□ 0.36
SHANK1-204ENST00000391814 LSP1P33241 339 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms