RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 ZNF658Q5TYW1 1059 aaPredicted RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 KLHL10Q6JEL2 608 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 SWSAP1Q6NVH7 229 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 TRIM65Q6PJ69 517 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 ZNF467Q7Z7K2 595 aaPredicted RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 VSTM4Q8IW00 320 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 KCTD17Q8N5Z5 321 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 GIMAP8Q8ND71 665 aaPredicted RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 RDM1Q8NG50 284 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 SRRTQ9BXP5 876 aaKnown RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 TMX1Q9H3N1 280 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 MLXIPQ9HAP2 919 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 GABBR1Q9UBS5 961 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 DACH1Q9UI36 760 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 MAPK8IP1Q9UQF2 711 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 FHOD1Q9Y613 1164 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 MGAMO43451 1857 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 FARP2O94887 1054 aaPredicted RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 RHOBTB3O94955 611 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 PSAPP07602 524 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 CD44P16070 742 aaKnown RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 PSMC5P62195 406 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 FAM193AP78312 1265 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 MAP2K5Q13163 448 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 MORN1Q5T089 497 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 TMCO3Q6UWJ1 677 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 UNC13DQ70J99 1090 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 HPS3Q969F9 1004 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 DNAJC19Q96DA6 116 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 FANCLQ9NW38 375 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 SLC5A4Q9NY91 659 aa13.75□□□□□ -0.21
CIITA-202ENST00000381835 DIS3Q9Y2L1 958 aaKnown RBP13.75□□□□□ -0.21
CIITA-202ENST00000381835 BACH1O14867 736 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 TXNP10599 105 aaKnown RBP13.74□□□□□ -0.21
CIITA-202ENST00000381835 GOLGA8FQ08AF8 430 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 GOLGA8DPQ0D2H9 430 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 TMEM63BQ5T3F8 832 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 KCNV1Q6PIU1 500 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 ABHD15Q6UXT9 468 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 CCDC60Q8IWA6 550 aaPredicted RBP13.74□□□□□ -0.21
CIITA-202ENST00000381835 REXO1L1PQ8IX06 675 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 SH2D3AQ9BRG2 576 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 TINF2Q9BSI4 451 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 RUSC1Q9BVN2 902 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 ZHX3Q9H4I2 956 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 POLD4Q9HCU8 107 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 ZNF236Q9UL36 1845 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 PVALEFA0A1B0GWK0 134 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 TMEM150BA6NC51 233 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 TBC1D8O95759 1140 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 SNAI1O95863 264 aaPredicted RBP13.74□□□□□ -0.21
CIITA-202ENST00000381835 PNMA6AP0CW24 399 aaPredicted RBP13.74□□□□□ -0.21
CIITA-202ENST00000381835 TTLL4Q14679 1199 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 PTPN21Q16825 1174 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 RINT1Q6NUQ1 792 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 MIS18BP1Q6P0N0 1132 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 MAMDC4Q6UXC1 1216 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 TRMT44Q8IYL2 757 aaKnown RBP13.74□□□□□ -0.21
CIITA-202ENST00000381835 SCFD2Q8WU76 684 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 COPS5Q92905 334 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 PANK4Q9NVE7 773 aa13.74□□□□□ -0.21
CIITA-202ENST00000381835 MYH11P35749 1972 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 ARHGEF35A5YM69 484 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 ERICH4A6NGS2 130 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 PPP1R3GB7ZBB8 358 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 SUPT20HL2P0C7V6 817 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 CYP2B6P20813 491 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 CTGFP29279 349 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 YWHABP31946 246 aaKnown RBP13.73□□□□□ -0.21
CIITA-202ENST00000381835 PRCPP42785 496 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 STK4Q13043 487 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 TAPT1Q6NXT6 567 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 CNNM4Q6P4Q7 775 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 CCDC62Q6P9F0 684 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 METTL7BQ6UX53 244 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 DHX37Q8IY37 1157 aaKnown RBP13.73□□□□□ -0.21
CIITA-202ENST00000381835 C4orf19Q8IY42 314 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 ATP6V0A1Q93050 837 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 CCDC43Q96MW1 224 aaKnown RBP13.73□□□□□ -0.21
CIITA-202ENST00000381835 CARD6Q9BX69 1037 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 VTA1Q9NP79 307 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 SLC39A2Q9NP94 309 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 ZSWIM8A7E2V4 1837 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 SYNGAP1Q96PV0 1343 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 ARHGAP6O43182 974 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 TPM1P09493 284 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 STX17P56962 302 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 COASYQ13057 564 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 GIT2Q14161 759 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 GJC2Q5T442 439 aaPredicted RBP13.73□□□□□ -0.21
CIITA-202ENST00000381835 CREBRFQ8IUR6 639 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 CCDC65Q8IXS2 484 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 REEP2Q9BRK0 252 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 ARHGAP39Q9C0H5 1083 aa13.73□□□□□ -0.21
CIITA-202ENST00000381835 EFCAB8A8MWE9 144 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 NOP56O00567 594 aaKnown RBP13.72□□□□□ -0.21
CIITA-202ENST00000381835 ZNF862O60290 1169 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 LYPLA2O95372 231 aa13.72□□□□□ -0.21
CIITA-202ENST00000381835 ADCYAP1R1P41586 468 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms