RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 SMCR8Q8TEV9 937 aaPredicted RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 C1orf50Q9BV19 199 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 KIFC1Q9BW19 673 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 C2orf54Q08AI8 447 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 TAS2R42Q7RTR8 314 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 PRUNE1Q86TP1 453 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 MCUQ8NE86 351 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 SH3KBP1Q96B97 665 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 TRAPPC9Q96Q05 1148 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 STK17AQ9UEE5 414 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 DNM3Q9UQ16 869 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 ANP32DO95626 131 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 GUCA1CO95843 209 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 TTC17Q96AE7 1141 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 C18orf25Q96B23 403 aaPredicted RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 CDC5LQ99459 802 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 MRPL1Q9BYD6 325 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 RUBCNLQ9H714 662 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 CHMP1AQ9HD42 196 aaPredicted RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 TLR3O15455 904 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 PSTPIP1O43586 416 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 R3HDM1Q15032 1099 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 NCF4Q15080 339 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 TMEM63BQ5T3F8 832 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 CYP4F22Q6NT55 531 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 IYDQ6PHW0 289 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 UNC45BQ8IWX7 931 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 RNF217Q8TC41 542 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.32□□□□□ -0.92
LIG3-202ENST00000378526 DAPK2Q9UIK4 370 aa9.32□□□□□ -0.92
LIG3-202ENST00000378526 H7C0C1 242 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 MYO1FO00160 1098 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 CLPTM1O96005 669 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 AFPP02771 609 aaKnown RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 KRT20P35900 424 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 ATP5OP48047 213 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 COX10Q12887 443 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 AKNAD1Q5T1N1 836 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 PDZK1Q5T2W1 519 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 PCNX4Q63HM2 1172 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 OTUD6AQ7L8S5 288 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 ARHGEF25Q86VW2 580 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 OR8H2Q8N162 312 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 RHOBTB2Q9BYZ6 727 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 GCOM2Q9BZD3 368 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 FAM153AQ9UHL3 310 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 HNRNPH1P31943 449 aaKnown RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 MAGOHP61326 146 aaKnown RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 TRMT1LQ7Z2T5 733 aaKnown RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 TCAIMQ8N3R3 496 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 TUBGCP2Q9BSJ2 902 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 RALGAPBQ86X10 1494 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 SEMA3DO95025 777 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 PTGS2P35354 604 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 SLC20A2Q08357 652 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 PTK2BQ14289 1009 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 CCDC153Q494R4 210 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 TMEM87BQ96K49 555 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 STK39Q9UEW8 545 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 ZNF644Q9H582 1327 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 ARPC4-TTLL3A0A0A6YYG9 625 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 CYTH3O43739 400 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 SEC24DO94855 1032 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 MAPRE1Q15691 268 aaKnown RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 CC2D1AQ6P1N0 951 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 SLC17A8Q8NDX2 589 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 APPL2Q8NEU8 664 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 SGSM3Q96HU1 749 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 LZTS2Q9BRK4 669 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 MRPL39Q9NYK5 338 aaKnown RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 RTEL1Q9NZ71 1219 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 SOS2Q07890 1332 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 ANGPT2O15123 496 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 EXOC3O60645 756 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 BCL10O95999 233 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 COG2Q14746 738 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 C20orf194Q5TEA3 1177 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 SETD3Q86TU7 594 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 BBS7Q8IWZ6 715 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 BTN2A2Q8WVV5 523 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 MRPL48Q96GC5 212 aaKnown RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 C1orf112Q9NSG2 853 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 SEL1LQ9UBV2 794 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 ABCC8Q09428 1581 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 PSMC3P17980 439 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 RPS6KB1P23443 525 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 GLMNQ92990 594 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 PPCSQ9HAB8 311 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 DBF4Q9UBU7 674 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 TEX28O15482 410 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 ALBP02768 609 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 PLCG2P16885 1265 aa9.31□□□□□ -0.92
LIG3-202ENST00000378526 GNL1P36915 607 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 GPBP1L1Q9HC44 474 aaPredicted RBP9.31□□□□□ -0.92
LIG3-202ENST00000378526 EVPLLA8MZ36 301 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 F8VZ95 297 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 RNF103O00237 685 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 PHKA1P46020 1223 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 C21orf59P57076 290 aa9.3□□□□□ -0.92
LIG3-202ENST00000378526 AOC3Q16853 763 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms