RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 BUD31P41223 144 aaPredicted RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 TMPOP42166 694 aaKnown RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 GRIA2P42262 883 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 SARSP49591 514 aaKnown RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 RAB33AQ14088 237 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 RSPO2Q6UXX9 243 aaPredicted RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 KYQ8NBH2 561 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 ZNF669Q96BR6 464 aaPredicted RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 IER2Q9BTL4 223 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 ADAM7Q9H2U9 754 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 USP40Q9NVE5 1235 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 CLDND1Q9NY35 253 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 RRP7AQ9Y3A4 280 aaKnown RBP6.03□□□□□ -1.44
USP48-202ENST00000374730 USP54Q70EL1 1684 aa6.03□□□□□ -1.44
USP48-202ENST00000374730 RGPD1P0DJD0 1748 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 DLX3O60479 287 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 TADA3O75528 432 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 FGFR1P11362 822 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 CDK11BP21127 795 aaKnown RBP6.02□□□□□ -1.45
USP48-202ENST00000374730 RPL13P26373 211 aaKnown RBP6.02□□□□□ -1.45
USP48-202ENST00000374730 CANXP27824 592 aaKnown RBP6.02□□□□□ -1.45
USP48-202ENST00000374730 ZC3H6P61129 1189 aaKnown RBP6.02□□□□□ -1.45
USP48-202ENST00000374730 NT5DC1Q5TFE4 455 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 CD300LDQ6UXZ3 194 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 TTLL6Q8N841 843 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 PHOSPHO1Q8TCT1 267 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 CHAMP1Q96JM3 812 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 C8orf37Q96NL8 207 aa6.02□□□□□ -1.45
USP48-202ENST00000374730 AARSD1Q9BTE6 412 aaKnown RBP6.02□□□□□ -1.45
USP48-202ENST00000374730 PTCH1Q13635 1447 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 U2SURPO15042 1029 aaKnown RBP6.01□□□□□ -1.45
USP48-202ENST00000374730 NOBOXO60393 691 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 DGKIO75912 1065 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 CELA3BP08861 270 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 ITGA1P56199 1179 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 GJA9P57773 515 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 NKX3-2P78367 333 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 SMAD4Q13485 552 aaKnown RBP6.01□□□□□ -1.45
USP48-202ENST00000374730 STEAP3Q658P3 488 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 CYP4F22Q6NT55 531 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 ZNF761Q86XN6 746 aaPredicted RBP6.01□□□□□ -1.45
USP48-202ENST00000374730 LRRC47Q8N1G4 583 aaKnown RBP6.01□□□□□ -1.45
USP48-202ENST00000374730 FAM26EQ8N5C1 309 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 PMFBP1Q8TBY8 1022 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.01□□□□□ -1.45
USP48-202ENST00000374730 YIPF4Q9BSR8 244 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 ARHGEF4Q9NR80 690 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 PCDHB4Q9Y5E5 795 aa6.01□□□□□ -1.45
USP48-202ENST00000374730 OVOS2A0A0J9YW53 1432 aa6□□□□□ -1.45
USP48-202ENST00000374730 OVOS2Q6IE36 1432 aa6□□□□□ -1.45
USP48-202ENST00000374730 TCRBV5S2A0A599 114 aa6□□□□□ -1.45
USP48-202ENST00000374730 MAFKO60675 156 aa6□□□□□ -1.45
USP48-202ENST00000374730 CR1LQ2VPA4 569 aa6□□□□□ -1.45
USP48-202ENST00000374730 SKOR2Q2VWA4 1001 aaPredicted RBP6□□□□□ -1.45
USP48-202ENST00000374730 FAM26FQ5R3K3 315 aa6□□□□□ -1.45
USP48-202ENST00000374730 ZKSCAN2Q63HK3 967 aa6□□□□□ -1.45
USP48-202ENST00000374730 CKAP2LQ8IYA6 745 aa6□□□□□ -1.45
USP48-202ENST00000374730 ADAMTS17Q8TE56 1095 aa6□□□□□ -1.45
USP48-202ENST00000374730 ZFYVE21Q9BQ24 234 aa6□□□□□ -1.45
USP48-202ENST00000374730 TRIM55Q9BYV6 548 aa6□□□□□ -1.45
USP48-202ENST00000374730 LNPKQ9C0E8 428 aa6□□□□□ -1.45
USP48-202ENST00000374730 CDIP1Q9H305 208 aa6□□□□□ -1.45
USP48-202ENST00000374730 SMOC1Q9H4F8 434 aa6□□□□□ -1.45
USP48-202ENST00000374730 DTLQ9NZJ0 730 aa6□□□□□ -1.45
USP48-202ENST00000374730 POLKQ9UBT6 870 aa6□□□□□ -1.45
USP48-202ENST00000374730 CNOT11Q9UKZ1 510 aaKnown RBP6□□□□□ -1.45
USP48-202ENST00000374730 MSRB2Q9Y3D2 182 aa6□□□□□ -1.45
USP48-202ENST00000374730 RGPD8O14715 1765 aaPredicted RBP6□□□□□ -1.45
USP48-202ENST00000374730 PEAK1Q9H792 1746 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 ZNF142P52746 1687 aaPredicted RBP5.99□□□□□ -1.45
USP48-202ENST00000374730 KRIT1O00522 736 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 STK10O94804 968 aaKnown RBP5.99□□□□□ -1.45
USP48-202ENST00000374730 STAT5AP42229 794 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 RIPK4P57078 832 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 CALD1Q05682 793 aaKnown RBP5.99□□□□□ -1.45
USP48-202ENST00000374730 EXOSC9Q06265 439 aaKnown RBP5.99□□□□□ -1.45
USP48-202ENST00000374730 MVPQ14764 893 aaKnown RBP5.99□□□□□ -1.45
USP48-202ENST00000374730 RTP5Q14D33 572 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 ALDH1L2Q3SY69 923 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 NAALADL2Q58DX5 795 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 PRR31Q5SQ13 230 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 UBXN11Q5T124 520 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 NBPF6Q5VWK0 638 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 USP53Q70EK8 1073 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 SKAP1Q86WV1 359 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 DCAF4Q8WV16 495 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 FRAT1Q92837 279 aaPredicted RBP5.99□□□□□ -1.45
USP48-202ENST00000374730 TOE1Q96GM8 510 aaKnown RBP5.99□□□□□ -1.45
USP48-202ENST00000374730 NBPF4Q96M43 638 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 PHF20Q9BVI0 1012 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 MYOTQ9UBF9 498 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 MARF1Q9Y4F3 1742 aaKnown RBP5.99□□□□□ -1.45
USP48-202ENST00000374730 USP6P35125 1406 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 SSH2Q76I76 1423 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 PTPRUQ92729 1446 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 KIF16BQ96L93 1317 aa5.99□□□□□ -1.45
USP48-202ENST00000374730 PIK3R4Q99570 1358 aa5.98□□□□□ -1.45
USP48-202ENST00000374730 TRAV20A0A0B4J274 112 aa5.98□□□□□ -1.45
USP48-202ENST00000374730 PRICKLE3O43900 615 aaPredicted RBP5.98□□□□□ -1.45
USP48-202ENST00000374730 IGHDP01880 384 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms