RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 ZNF76P36508 570 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 STAT5BP51692 787 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 CLUL1Q15846 466 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 PAN2Q504Q3 1202 aaKnown RBP11.8□□□□□ -0.52
CLRN3-201ENST00000368671 PPP1R18Q6NYC8 613 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 ZNF689Q96CS4 500 aaPredicted RBP11.8□□□□□ -0.52
CLRN3-201ENST00000368671 EPAS1Q99814 870 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 ADAM33Q9BZ11 813 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 LMAN2LQ9H0V9 348 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 IGFLR1Q9H665 355 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 RC3H2Q9HBD1 1191 aaKnown RBP11.8□□□□□ -0.52
CLRN3-201ENST00000368671 AGO4Q9HCK5 861 aaKnown RBP11.8□□□□□ -0.52
CLRN3-201ENST00000368671 ALG13Q9NP73 1137 aaKnown RBP11.8□□□□□ -0.52
CLRN3-201ENST00000368671 NAP1L2Q9ULW6 460 aaPredicted RBP11.8□□□□□ -0.52
CLRN3-201ENST00000368671 V9GY48 417 aaPredicted RBP11.8□□□□□ -0.52
CLRN3-201ENST00000368671 NFASCO94856 1347 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 TRANK1O15050 2925 aa11.8□□□□□ -0.52
CLRN3-201ENST00000368671 MUC3AQ02505 3323 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 KLF18A0A0U1RQI7 1052 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 STXBP3O00186 592 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 FOSP01100 380 aaPredicted RBP11.79□□□□□ -0.52
CLRN3-201ENST00000368671 RPLP2P05387 115 aaKnown RBP11.79□□□□□ -0.52
CLRN3-201ENST00000368671 HYAL1Q12794 435 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 PAK2Q13177 524 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 ITGB3BPQ13352 177 aaPredicted RBP11.79□□□□□ -0.52
CLRN3-201ENST00000368671 ADCK5Q3MIX3 580 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 CEP55Q53EZ4 464 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 PLPPR4Q7Z2D5 763 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 RTN4RL1Q86UN2 441 aaPredicted RBP11.79□□□□□ -0.52
CLRN3-201ENST00000368671 NPAS4Q8IUM7 802 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 CLP1Q92989 425 aaKnown RBP11.79□□□□□ -0.52
CLRN3-201ENST00000368671 UIMC1Q96RL1 719 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 FTHL17Q9BXU8 183 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 CELF4Q9BZC1 486 aaKnown RBP11.79□□□□□ -0.52
CLRN3-201ENST00000368671 PADI3Q9ULW8 664 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 FAM50BQ9Y247 325 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 PCDHA2Q9Y5H9 948 aa11.79□□□□□ -0.52
CLRN3-201ENST00000368671 MRPL42Q9Y6G3 142 aaKnown RBP11.79□□□□□ -0.52
CLRN3-201ENST00000368671 SMIM35A0A1B0GVV1 85 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 hCG_1984214I3L0E3 225 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 BACH1O14867 736 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 MMP1P03956 469 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 STAG3L1P0CL83 205 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 GTF2F1P35269 517 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLRN3-201ENST00000368671 LTBRP36941 435 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 SREBF1P36956 1147 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 GATMP50440 423 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 KRT76Q01546 638 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 EXOSC10Q01780 885 aaKnown RBP11.78□□□□□ -0.52
CLRN3-201ENST00000368671 FUT2Q10981 343 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 NFX1Q12986 1120 aaKnown RBP11.78□□□□□ -0.52
CLRN3-201ENST00000368671 AP3B2Q13367 1082 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 COL19A1Q14993 1142 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 TMEM266Q2M3C6 531 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 JAKMIP3Q5VZ66 844 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 MTHFD1LQ6UB35 978 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 DHX32Q7L7V1 743 aaKnown RBP11.78□□□□□ -0.52
CLRN3-201ENST00000368671 CMTR2Q8IYT2 770 aaKnown RBP11.78□□□□□ -0.52
CLRN3-201ENST00000368671 ZNF713Q8N859 430 aaPredicted RBP11.78□□□□□ -0.52
CLRN3-201ENST00000368671 DDX12PQ92771 950 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 BARHL2Q9NY43 387 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 LRFN2Q9ULH4 789 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 GINS2Q9Y248 185 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 SQORQ9Y6N5 450 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 IGSF9BQ9UPX0 1349 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 PLXNA4Q9HCM2 1894 aa11.78□□□□□ -0.52
CLRN3-201ENST00000368671 TTC3P53804 2025 aa11.77□□□□□ -0.52
CLRN3-201ENST00000368671 MEIS1O00470 390 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 LINC01565O15544 149 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 NCK2O43639 380 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 ATG7O95352 703 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 CCNE2O96020 404 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 SCG2P13521 617 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 ALADP13716 330 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 KLRC1P26715 233 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 CDC27P30260 824 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 CLK2P49760 499 aaKnown RBP11.77□□□□□ -0.53
CLRN3-201ENST00000368671 FGD1P98174 961 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 DLX2Q07687 328 aaPredicted RBP11.77□□□□□ -0.53
CLRN3-201ENST00000368671 CSPP1Q1MSJ5 1256 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 BMP2KLQ5H9B9 411 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 FAM160B1Q5W0V3 765 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 PLA2G4DQ86XP0 818 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 PPP1R16BQ96T49 567 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 PLVAPQ9BX97 442 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 TMX1Q9H3N1 280 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 ZNF302Q9NR11 478 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 PLAGL2Q9UPG8 496 aa11.77□□□□□ -0.53
CLRN3-201ENST00000368671 IGKV6D-21A0A0A0MT36 114 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 PRR33A8MZF0 331 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 FAM86B1E9PN63 330 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 MBTPS2O43462 519 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 HBP1O60381 514 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 TBX10O75333 385 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 ITGB1P05556 798 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 FAM86B2P0C5J1 330 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 DNAJB1P25685 340 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 SLC26A2P50443 739 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 ZP2Q05996 745 aa11.76□□□□□ -0.53
CLRN3-201ENST00000368671 CTC1Q2NKJ3 1217 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms