RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 VPS36Q86VN1 386 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 ZNF473Q8WTR7 871 aaKnown RBP13.24□□□□□ -0.29
CLIP3-201ENST00000360535 EFCC1Q9HA90 598 aa13.24□□□□□ -0.29
CLIP3-201ENST00000360535 FAM86B1E9PN63 330 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 PPP1R37O75864 691 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 FGGP02679 453 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 FAM86B2P0C5J1 330 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 CLK2P49760 499 aaKnown RBP13.23□□□□□ -0.29
CLIP3-201ENST00000360535 GABPAQ06546 454 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 KRT71Q3SY84 523 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 ERMNQ8TAM6 284 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 WHAMMQ8TF30 809 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 NR2E1Q9Y466 385 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 CALUO43852 315 aaPredicted RBP13.23□□□□□ -0.29
CLIP3-201ENST00000360535 GCFC2P16383 781 aaKnown RBP13.23□□□□□ -0.29
CLIP3-201ENST00000360535 HOXD13P35453 343 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 USP11P51784 963 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 DHX9Q08211 1270 aaKnown RBP13.23□□□□□ -0.29
CLIP3-201ENST00000360535 GPATCH11Q8N954 259 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 TPCN2Q8NHX9 752 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 SYN2Q92777 582 aaPredicted RBP13.23□□□□□ -0.29
CLIP3-201ENST00000360535 LRRC4CQ9HCJ2 640 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 DCDC2CA8MYV0 355 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 FAM13AO94988 1023 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 SNHG28P0DPA3 235 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 MDH1P40925 334 aaKnown RBP13.23□□□□□ -0.29
CLIP3-201ENST00000360535 GALCP54803 685 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 B4GALNT4Q76KP1 1039 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 NLRP14Q86W24 1093 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 LRRC4BQ9NT99 713 aa13.23□□□□□ -0.29
CLIP3-201ENST00000360535 DDX39AO00148 427 aaKnown RBP13.22□□□□□ -0.29
CLIP3-201ENST00000360535 CFBP00751 764 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 KRT13P13646 458 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 SKOR1P84550 965 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 PTGISQ16647 500 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 CERKLQ49MI3 558 aaPredicted RBP13.22□□□□□ -0.29
CLIP3-201ENST00000360535 AADACL2Q6P093 401 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 SH2D3AQ9BRG2 576 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 EPN3Q9H201 632 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 TMOD4Q9NZQ9 345 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 TNRC6CQ9HCJ0 1690 aaKnown RBP13.22□□□□□ -0.29
CLIP3-201ENST00000360535 EML1O00423 815 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 DDX3XO00571 662 aaKnown RBP eCLIP13.22□□□□□ -0.29
CLIP3-201ENST00000360535 IFI16Q16666 785 aaKnown RBP13.22□□□□□ -0.29
CLIP3-201ENST00000360535 KDM7AQ6ZMT4 941 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 MDM1Q8TC05 714 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 GLG1Q92896 1179 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 RABGAP1Q9Y3P9 1069 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 GAKO14976 1311 aa13.22□□□□□ -0.29
CLIP3-201ENST00000360535 MEIS2O14770 477 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 EVI5O60447 810 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 SPATA31C1P0DKV0 1188 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 HNRNPH1P31943 449 aaKnown RBP13.21□□□□□ -0.29
CLIP3-201ENST00000360535 STAT1P42224 750 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 MAGOHP61326 146 aaKnown RBP13.21□□□□□ -0.29
CLIP3-201ENST00000360535 ZYXQ15942 572 aaKnown RBP13.21□□□□□ -0.29
CLIP3-201ENST00000360535 UAP1Q16222 522 aaPredicted RBP13.21□□□□□ -0.29
CLIP3-201ENST00000360535 MYCBPAPQ8TBZ2 947 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 MAGOHBQ96A72 148 aaKnown RBP13.21□□□□□ -0.29
CLIP3-201ENST00000360535 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.21□□□□□ -0.29
CLIP3-201ENST00000360535 CCDC113Q9H0I3 377 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 ISCUQ9H1K1 167 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 NT5C2P49902 561 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 SLFN12Q8IYM2 578 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 AMFRQ9UKV5 643 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 RREB1Q92766 1687 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 SMCHD1A6NHR9 2005 aa13.21□□□□□ -0.29
CLIP3-201ENST00000360535 DDTLA6NHG4 134 aaPredicted RBP13.21□□□□□ -0.3
CLIP3-201ENST00000360535 BUB1BO60566 1050 aaPredicted RBP13.21□□□□□ -0.3
CLIP3-201ENST00000360535 ICA1Q05084 483 aa13.21□□□□□ -0.3
CLIP3-201ENST00000360535 ZNF746Q6NUN9 644 aaPredicted RBP13.21□□□□□ -0.3
CLIP3-201ENST00000360535 FAM186BQ8IYM0 893 aa13.21□□□□□ -0.3
CLIP3-201ENST00000360535 PCIF1Q9H4Z3 704 aa13.21□□□□□ -0.3
CLIP3-201ENST00000360535 KCNMB3Q9NPA1 279 aa13.21□□□□□ -0.3
CLIP3-201ENST00000360535 ATF5Q9Y2D1 282 aaPredicted RBP13.21□□□□□ -0.3
CLIP3-201ENST00000360535 MEFVO15553 781 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 RPL13P26373 211 aaKnown RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 TNFRSF8P28908 595 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 SF3B2Q13435 895 aaKnown RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 DRAP1Q14919 205 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 EDRF1Q3B7T1 1238 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 CHADLQ6NUI6 762 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 CCDC174Q6PII3 467 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 MMS22LQ6ZRQ5 1243 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 FBXO11Q86XK2 927 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 SYCP3Q8IZU3 236 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 SLC35G2Q8TBE7 412 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 RUBCNQ92622 972 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 TEKT1Q969V4 418 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 SLC35C1Q96A29 364 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 LRRC45Q96CN5 670 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 FAM163AQ96GL9 167 aaPredicted RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 PBKQ96KB5 322 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 EIF2AK1Q9BQI3 630 aaKnown RBP13.2□□□□□ -0.3
CLIP3-201ENST00000360535 TMBIM4Q9HC24 238 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 TAS2R14Q9NYV8 317 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 DNAJC12Q9UKB3 198 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 PPP1R9AQ9ULJ8 1098 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 IGKV6D-41A0A0C4DH26 115 aa13.2□□□□□ -0.3
CLIP3-201ENST00000360535 GOLGA6L7A0A1B0GV03 622 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms