RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 DENND3A2RUS2 1198 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 MBLAC1A4D2B0 266 aaPredicted RBP12.85□□□□□ -0.35
RTN3-204ENST00000354497 PALM3A6NDB9 673 aaPredicted RBP12.85□□□□□ -0.35
RTN3-204ENST00000354497 C2CD4DB7Z1M9 353 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 INSRRP14616 1297 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 SARSP49591 514 aaKnown RBP12.85□□□□□ -0.35
RTN3-204ENST00000354497 SYCE2Q6PIF2 218 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 CRIPAKQ8N1N5 446 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 KCNG4Q8TDN1 519 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 TRAPPC12Q8WVT3 735 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 SENP7Q9BQF6 1050 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 SMARCAD1Q9H4L7 1026 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 FRMPD4Q14CM0 1322 aa12.85□□□□□ -0.35
RTN3-204ENST00000354497 MYO15AQ9UKN7 3530 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 TTC3P53804 2025 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 PNMA6FA0A0J9YX94 578 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 GSTTP1A0A1W2PQM5 241 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 RRN3P2A6NIE6 340 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 FSCN2O14926 492 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 ATP9AO75110 1047 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 RPLP2P05387 115 aaKnown RBP12.84□□□□□ -0.35
RTN3-204ENST00000354497 ASGR2P07307 311 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 PSEN1P49768 467 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 PDAP1Q13442 181 aaKnown RBP12.84□□□□□ -0.35
RTN3-204ENST00000354497 SLC35G1Q2M3R5 365 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 FAM102BQ5T8I3 360 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 PCNX4Q63HM2 1172 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 PDE12Q6L8Q7 609 aaKnown RBP12.84□□□□□ -0.35
RTN3-204ENST00000354497 CES5AQ6NT32 575 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 USP17L6PQ6QN14 398 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 CWC27Q6UX04 472 aaKnown RBP12.84□□□□□ -0.35
RTN3-204ENST00000354497 CELF4Q9BZC1 486 aaKnown RBP12.84□□□□□ -0.35
RTN3-204ENST00000354497 TMX1Q9H3N1 280 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 POMKQ9H5K3 350 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 CNNM2Q9H8M5 875 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 TYW1Q9NV66 732 aaKnown RBP12.84□□□□□ -0.35
RTN3-204ENST00000354497 PUF60Q9UHX1 559 aaKnown RBP12.84□□□□□ -0.35
RTN3-204ENST00000354497 LAMA4Q16363 1823 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 IGSF9BQ9UPX0 1349 aa12.84□□□□□ -0.35
RTN3-204ENST00000354497 HIDE1A8MVS5 230 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 WEE2P0C1S8 567 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 SDSP20132 328 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 KRT76Q01546 638 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 GRM4Q14833 912 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 TPRNQ4KMQ1 711 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 CASP10Q92851 521 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 AZI2Q9H6S1 392 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 RIOX1Q9H6W3 641 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 DIAPH3Q9NSV4 1193 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 SQORQ9Y6N5 450 aa12.83□□□□□ -0.36
RTN3-204ENST00000354497 MGEA5O60502 916 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 RPS6KA5O75582 802 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 FGFR1P11362 822 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 KCNA2P16389 499 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 HOXB8P17481 243 aaPredicted RBP12.82□□□□□ -0.36
RTN3-204ENST00000354497 LAG3P18627 525 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 BRD2P25440 801 aaKnown RBP12.82□□□□□ -0.36
RTN3-204ENST00000354497 XRRA1Q6P2D8 792 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 TMEM184AQ6ZMB5 413 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 CYB5R4Q7L1T6 521 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 TMC7Q7Z402 723 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 TDRD5Q8NAT2 981 aaKnown RBP12.82□□□□□ -0.36
RTN3-204ENST00000354497 MRPS27Q92552 414 aaKnown RBP12.82□□□□□ -0.36
RTN3-204ENST00000354497 GPRASP2Q96D09 838 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 CDHR1Q96JP9 859 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 ADAM2Q99965 735 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 ATP6V0A4Q9HBG4 840 aa12.82□□□□□ -0.36
RTN3-204ENST00000354497 CYTH3O43739 400 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 PBX3P40426 434 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 TERF1P54274 439 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 SEC23AQ15436 765 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 RARS2Q5T160 578 aaKnown RBP12.81□□□□□ -0.36
RTN3-204ENST00000354497 L1TD1Q5T7N2 865 aaKnown RBP12.81□□□□□ -0.36
RTN3-204ENST00000354497 TICAM2Q86XR7 235 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 TNPO1Q92973 898 aaKnown RBP12.81□□□□□ -0.36
RTN3-204ENST00000354497 NECTIN4Q96NY8 510 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 PPP1R16BQ96T49 567 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 NGRNQ9NPE2 291 aaKnown RBP12.81□□□□□ -0.36
RTN3-204ENST00000354497 C1orf112Q9NSG2 853 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 LIMD1Q9UGP4 676 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 NOC2LQ9Y3T9 749 aaKnown RBP12.81□□□□□ -0.36
RTN3-204ENST00000354497 PCDHA2Q9Y5H9 948 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 DMDP11532 3685 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 KAT6AQ92794 2004 aa12.81□□□□□ -0.36
RTN3-204ENST00000354497 MED19A0JLT2 244 aaPredicted RBP12.8□□□□□ -0.36
RTN3-204ENST00000354497 ERICH2A1L162 156 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 IFIT3O14879 490 aaKnown RBP12.8□□□□□ -0.36
RTN3-204ENST00000354497 PDE4AP27815 886 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 MTHFRP42898 656 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 MTMR1Q13613 665 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 KCNC3Q14003 757 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 PLCB4Q15147 1175 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 DGLUCYQ7Z3D6 616 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 SMAP1Q8IYB5 467 aaPredicted RBP12.8□□□□□ -0.36
RTN3-204ENST00000354497 HINFPQ9BQA5 517 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 ADAM7Q9H2U9 754 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 CWH43Q9H720 699 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 ERVK-5Q9HDB9 667 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 RGS18Q9NS28 235 aa12.8□□□□□ -0.36
RTN3-204ENST00000354497 DBR1Q9UK59 544 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms