RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 ZNF577Q9BSK1 485 aa16.42■□□□□ 0.22
PRPF40A-201ENST00000354363 CDHR5Q9HBB8 845 aa16.42■□□□□ 0.22
PRPF40A-201ENST00000354363 C11orf16Q9NQ32 467 aa16.42■□□□□ 0.22
PRPF40A-201ENST00000354363 NCK2O43639 380 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 GPR37L1O60883 481 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 MMP1P03956 469 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 SETQ01105 290 aaPredicted RBP16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 HYAL1Q12794 435 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 NFX1Q12986 1120 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 CAMK1Q14012 370 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 CTC1Q2NKJ3 1217 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 PAN2Q504Q3 1202 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 FBXL16Q8N461 479 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 P2RX5Q93086 422 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 PHKBQ93100 1093 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 AGXT2Q9BYV1 514 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 ERVK-5Q9HDB9 667 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 ALG13Q9NP73 1137 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 TBC1D22BQ9NU19 505 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 PLAGL2Q9UPG8 496 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 GINS2Q9Y248 185 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 NOC2LQ9Y3T9 749 aaKnown RBP16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 MGEA5O60502 916 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 CSPG5O95196 566 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 RPS6KB1P23443 525 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 GNA11P29992 359 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 SSTR3P32745 418 aaPredicted RBP16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 GATMP50440 423 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 NTRK3Q16288 839 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 ZNF746Q6NUN9 644 aaPredicted RBP16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 RASGRP4Q8TDF6 673 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 TMEM40Q8WWA1 233 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 C5orf42Q9H799 3197 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 LRFN2Q9ULH4 789 aa16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 MAFBQ9Y5Q3 323 aaPredicted RBP16.41■□□□□ 0.22
PRPF40A-201ENST00000354363 FAM86C2PA6NEL3 165 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 RPS6KA5O75582 802 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 C22orf31O95567 290 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 ITGB1P05556 798 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 CIITAP33076 1130 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 SARSP49591 514 aaKnown RBP16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 AKAP17AQ02040 695 aaKnown RBP16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 NAALADL2Q58DX5 795 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 CKAP2LQ8IYA6 745 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 SMAP1Q8IYB5 467 aaPredicted RBP16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 SPPL3Q8TCT6 385 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 BBXQ8WY36 941 aaPredicted RBP16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 FAM50BQ9Y247 325 aa16.4■□□□□ 0.22
PRPF40A-201ENST00000354363 PPFIA3O75145 1194 aa16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 DNAJB1P25685 340 aa16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 GTF2F1P35269 517 aaKnown RBP eCLIP16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 DLX2Q07687 328 aaPredicted RBP16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 PRR16Q569H4 304 aa16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 FAM43BQ6ZT52 329 aaPredicted RBP16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 KLHL23Q8NBE8 558 aa16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 LENG9Q96B70 501 aa16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 RNF26Q9BY78 433 aaPredicted RBP16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 ST3GAL5Q9UNP4 418 aa16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 PCDHA10Q9Y5I2 948 aa16.39■□□□□ 0.21
PRPF40A-201ENST00000354363 EDIL3O43854 480 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 PSAPP07602 524 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 IBSPP21815 317 aaPredicted RBP16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 PLA2G5P39877 138 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 ODR4Q5SWX8 454 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 TRMT1LQ7Z2T5 733 aaKnown RBP16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 CCDC148Q8NFR7 591 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 BICD2Q8TD16 824 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 PPP1R16BQ96T49 567 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 ADAM2Q99965 735 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 SLC26A6Q9BXS9 759 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 IGFLR1Q9H665 355 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 GABBR1Q9UBS5 961 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 PRKAG3Q9UGI9 489 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 PCDHB7Q9Y5E2 793 aa16.38■□□□□ 0.21
PRPF40A-201ENST00000354363 TBX10O75333 385 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 VTNP04004 478 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 IFNAR1P17181 557 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 PSMA5P28066 241 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 CRYBB1P53674 252 aaPredicted RBP16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 ZP2Q05996 745 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 KIZQ2M2Z5 673 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 FAM228AQ86W67 206 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 OSMRQ99650 979 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 RGS18Q9NS28 235 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 C1orf112Q9NSG2 853 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 VPS54Q9P1Q0 977 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 TCEAL9Q9UHQ7 104 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 DENND3A2RUS2 1198 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 C19orf67A6NJJ6 358 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 C9IYK1 514 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 GPR182O15218 404 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 LINC01565O15544 149 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 GPR32O75388 356 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 PDIA3P30101 505 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 IRS1P35568 1242 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 EVCP57679 992 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 CCT2P78371 535 aaKnown RBP16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 ADAM15Q13444 863 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 CLUL1Q15846 466 aa16.37■□□□□ 0.21
PRPF40A-201ENST00000354363 SLC24A5Q71RS6 500 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms