RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 FLCNQ8NFG4 579 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 WDR60Q8WVS4 1066 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 FSBPO95073 299 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 HSPA4LO95757 839 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 MLPHQ9BV36 600 aaPredicted RBP13.46□□□□□ -0.25
COL6A3-203ENST00000353578 NACA2Q9H009 215 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 ABHD10Q9NUJ1 306 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 TMOD3Q9NYL9 352 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 BUB1O43683 1085 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 TOM1L1O75674 476 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 GHRP10912 638 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 CSTF3Q12996 717 aaKnown RBP13.46□□□□□ -0.25
COL6A3-203ENST00000353578 TUBA3EQ6PEY2 450 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 BEST2Q8NFU1 509 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 SHROOM2Q13796 1616 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 DEPDC1Q5TB30 811 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 ARHGAP27Q6ZUM4 889 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 MTERF3Q96E29 417 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 SNF8Q96H20 258 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 MYH7P12883 1935 aa13.46□□□□□ -0.25
COL6A3-203ENST00000353578 ASAP2O43150 1006 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 SNX25Q9H3E2 840 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 CORO1CQ9ULV4 474 aaPredicted RBP13.46□□□□□ -0.26
COL6A3-203ENST00000353578 AP3B1O00203 1094 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 PMS2P54278 862 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 PTK2Q05397 1052 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 EFTUD2Q15029 972 aaKnown RBP eCLIP13.46□□□□□ -0.26
COL6A3-203ENST00000353578 KRT14P02533 472 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 OLR1P78380 273 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 TCEANC2Q96MN5 208 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 KLHL25Q9H0H3 589 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 CYP26B1Q9NR63 512 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 MYH15Q9Y2K3 1946 aa13.46□□□□□ -0.26
COL6A3-203ENST00000353578 ABCC4O15439 1325 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TRIM49P0CI25 452 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TRIM49CP0CI26 452 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 CYP7A1P22680 504 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TMCO1Q9UM00 188 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 KLHL41O60662 606 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 DDAH1O94760 285 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TNFAIP8O95379 198 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 ARPC4P59998 168 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 NAA35Q5VZE5 725 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.45□□□□□ -0.26
COL6A3-203ENST00000353578 OSBPL8Q9BZF1 889 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 DMAP1Q9NPF5 467 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-203ENST00000353578 FMNL1O95466 1100 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-203ENST00000353578 ARMC3Q5W041 872 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 C1orf50Q9BV19 199 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 A0A1W2PQC6 194 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 H2AFYO75367 372 aaKnown RBP13.45□□□□□ -0.26
COL6A3-203ENST00000353578 RPS6KA5O75582 802 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TOMM70O94826 608 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 CLPTM1O96005 669 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 PDE6AP16499 860 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 OLFML1Q6UWY5 402 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TSPYL6Q8N831 410 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TRPC4APQ8TEL6 797 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 HMG20AQ9NP66 347 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 FAM47DPA6NHR8 397 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 PDE9AO76083 593 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TESK2Q96S53 571 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 RANBP17Q9H2T7 1088 aaKnown RBP13.45□□□□□ -0.26
COL6A3-203ENST00000353578 SLC13A4Q9UKG4 626 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 A6NJR5 290 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 ZPR1O75312 459 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 GFPT2O94808 682 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 IRAK1P51617 712 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TTC6Q86TZ1 520 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 POP5Q969H6 163 aaKnown RBP13.45□□□□□ -0.26
COL6A3-203ENST00000353578 CTNNAL1Q9UBT7 734 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 ABCC1P33527 1531 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 HOXC8P31273 242 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 PTK2BQ14289 1009 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 TBC1D9BQ66K14 1250 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 MYLK4Q86YV6 388 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-203ENST00000353578 MIEF2Q96C03 454 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 VWA5AO00534 786 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 POLD1P28340 1107 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 GABPAQ06546 454 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 ADAM30Q9UKF2 790 aa13.45□□□□□ -0.26
COL6A3-203ENST00000353578 NPR1P16066 1061 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 POLKQ9UBT6 870 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 FKBP6O75344 327 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 PIK3AP1Q6ZUJ8 805 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 LZTS1Q9Y250 596 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 SH3GLB1Q9Y371 365 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 RAD54L2Q9Y4B4 1467 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 VAMP4O75379 141 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 TRIM71Q2Q1W2 868 aaKnown RBP13.44□□□□□ -0.26
COL6A3-203ENST00000353578 FAM178BQ8IXR5 827 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 MRPL1Q9BYD6 325 aaKnown RBP13.44□□□□□ -0.26
COL6A3-203ENST00000353578 SMIM31A0A1B0GVY4 71 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 SOWAHDA6NJG2 315 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 ABCB4P21439 1286 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 PLEKHM3Q6ZWE6 761 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 COG4Q9H9E3 785 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 LCA5LO95447 670 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 ALOX5P09917 674 aa13.44□□□□□ -0.26
COL6A3-203ENST00000353578 APOA5Q6Q788 366 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms