RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 F8VZ95 297 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 PLA2G4BP0C869 781 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 SCNN1DP51172 638 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 PRPF4BQ13523 1007 aaKnown RBP24.38■■□□□ 1.49
TRIM28-202ENST00000341753 DOK7Q18PE1 504 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 CCDC65Q8IXS2 484 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 ODF2LQ9ULJ1 636 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 SUFUQ9UMX1 484 aa24.38■■□□□ 1.49
TRIM28-202ENST00000341753 DDX60LQ5H9U9 1706 aaKnown RBP24.37■■□□□ 1.49
TRIM28-202ENST00000341753 SRRM3A6NNA2 597 aaPredicted RBP24.37■■□□□ 1.49
TRIM28-202ENST00000341753 ECM2O94769 699 aaPredicted RBP24.37■■□□□ 1.49
TRIM28-202ENST00000341753 GNA14O95837 355 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 STAT3P40763 770 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 GKAP1Q5VSY0 366 aaPredicted RBP24.37■■□□□ 1.49
TRIM28-202ENST00000341753 TCERG1LQ5VWI1 586 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 NEDD1Q8NHV4 660 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP24.37■■□□□ 1.49
TRIM28-202ENST00000341753 HVCN1Q96D96 273 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 PCDHA12Q9UN75 941 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 CAND2O75155 1236 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 SHBGP04278 402 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 NF2P35240 595 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 AGBL2Q5U5Z8 902 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 C15orf52Q6ZUT6 534 aaKnown RBP24.37■■□□□ 1.49
TRIM28-202ENST00000341753 SGSM3Q96HU1 749 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 PSMD1Q99460 953 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 GOPCQ9HD26 462 aa24.37■■□□□ 1.49
TRIM28-202ENST00000341753 CES2O00748 559 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 CETN3O15182 167 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 SCP2P22307 547 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 U2AF1L4Q8WU68 220 aaKnown RBP24.36■■□□□ 1.49
TRIM28-202ENST00000341753 DDX4Q9NQI0 724 aaKnown RBP24.36■■□□□ 1.49
TRIM28-202ENST00000341753 ESYT2A0FGR8 921 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 FGGP02679 453 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 DRD4P21917 467 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 ELF1P32519 619 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 ORC2Q13416 577 aaPredicted RBP24.36■■□□□ 1.49
TRIM28-202ENST00000341753 MTMR3Q13615 1198 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 OSGEPQ9NPF4 335 aa24.36■■□□□ 1.49
TRIM28-202ENST00000341753 POLRMTO00411 1230 aaKnown RBP24.35■■□□□ 1.49
TRIM28-202ENST00000341753 PON1P27169 355 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 DPY19L2P1Q6NXN4 242 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 CERS5Q8N5B7 392 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 CALR3Q96L12 384 aaKnown RBP24.35■■□□□ 1.49
TRIM28-202ENST00000341753 RIOX1Q9H6W3 641 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 CDK5RAP2Q96SN8 1893 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 TLDC2A0PJX2 215 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 CTNND1O60716 968 aaKnown RBP24.35■■□□□ 1.49
TRIM28-202ENST00000341753 AKR1B1P15121 316 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 EIF1ADQ8N9N8 165 aaKnown RBP24.35■■□□□ 1.49
TRIM28-202ENST00000341753 SELENOSQ9BQE4 189 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 BCAS3Q9H6U6 928 aa24.35■■□□□ 1.49
TRIM28-202ENST00000341753 FRMD3A2A2Y4 597 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 BTNL10A8MVZ5 291 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 MARSP56192 900 aaKnown RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 IFI16Q16666 785 aaKnown RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 EXOC3L4Q17RC7 722 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 UHMK1Q8TAS1 419 aaKnown RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 UTP11Q9Y3A2 253 aaKnown RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 C5orf60A6NFR6 353 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 BHMG1C9JSJ3 638 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 PPP1R11O60927 126 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 CYP11B2P19099 503 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 DPP8Q6V1X1 898 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 KIRREL3Q8IZU9 778 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 ARMCX3Q9UH62 379 aaPredicted RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 POTEFA5A3E0 1075 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 H2AFZP0C0S5 128 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 POTEIP0CG38 1075 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 SLC16A2P36021 539 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 UBAP2Q5T6F2 1119 aaKnown RBP24.34■■□□□ 1.49
TRIM28-202ENST00000341753 POTEGQ6S5H5 508 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 POTEEQ6S8J3 1075 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 H2AFVQ71UI9 128 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 NT5DC3Q86UY8 548 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 CCDC26Q8TAB7 109 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 CCT6BQ92526 530 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 FAM212AQ96EL1 285 aa24.34■■□□□ 1.49
TRIM28-202ENST00000341753 CCDC188H7C350 402 aa24.33■■□□□ 1.49
TRIM28-202ENST00000341753 MEIS1O00470 390 aa24.33■■□□□ 1.49
TRIM28-202ENST00000341753 DDX3XO00571 662 aaKnown RBP eCLIP24.33■■□□□ 1.493e-21■■□□□ 12.4
TRIM28-202ENST00000341753 BBOX1O75936 387 aa24.33■■□□□ 1.49
TRIM28-202ENST00000341753 ADRA2BP18089 450 aa24.33■■□□□ 1.49
TRIM28-202ENST00000341753 GLG1Q92896 1179 aa24.33■■□□□ 1.49
TRIM28-202ENST00000341753 TBC1D31Q96DN5 1066 aa24.33■■□□□ 1.49
TRIM28-202ENST00000341753 XPO6Q96QU8 1125 aaKnown RBP24.33■■□□□ 1.49
TRIM28-202ENST00000341753 MYH7BA7E2Y1 1941 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 FLOT1O75955 427 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 GFPT2O94808 682 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 AFPP02771 609 aaKnown RBP24.33■■□□□ 1.48
TRIM28-202ENST00000341753 ABCB4P21439 1286 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 ZNF211Q13398 564 aaPredicted RBP24.33■■□□□ 1.48
TRIM28-202ENST00000341753 ARSHQ5FYA8 562 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 WLSQ5T9L3 541 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 TTBK2Q6IQ55 1244 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 ATP8B4Q8TF62 1192 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 FMO2Q99518 471 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 ZNF287Q9HBT7 754 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 STXBP5LQ9Y2K9 1186 aa24.33■■□□□ 1.48
TRIM28-202ENST00000341753 SPATA31A6Q5VVP1 1343 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms