RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SNHG28P0DPA3 235 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 PDE6CP51160 858 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 POLR2FP61218 127 aaKnown RBP7.46□□□□□ -1.21
SF3B1-201ENST00000335508 NOGQ13253 232 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 SWSAP1Q6NVH7 229 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 ALKBH5Q6P6C2 394 aaKnown RBP7.46□□□□□ -1.21
SF3B1-201ENST00000335508 C11orf57Q6ZUT1 292 aaPredicted RBP7.46□□□□□ -1.21
SF3B1-201ENST00000335508 USP49Q70CQ1 688 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 SHCBP1Q8NEM2 672 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 GCOM2Q9BZD3 368 aaPredicted RBP7.46□□□□□ -1.21
SF3B1-201ENST00000335508 CWC15Q9P013 229 aaKnown RBP7.46□□□□□ -1.21
SF3B1-201ENST00000335508 LCMT1Q9UIC8 334 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 F5P12259 2224 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 POTEFA5A3E0 1075 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 A6NNZ2 444 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 CELF2O95319 508 aaKnown RBP7.46□□□□□ -1.21
SF3B1-201ENST00000335508 POTEIP0CG38 1075 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 ZNF280AP59817 542 aaPredicted RBP7.46□□□□□ -1.21
SF3B1-201ENST00000335508 KRT31Q15323 416 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 ARHGAP44Q17R89 818 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 TUBB8Q3ZCM7 444 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 POTEGQ6S5H5 508 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 POTEEQ6S8J3 1075 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 PDZD4Q76G19 769 aaPredicted RBP7.46□□□□□ -1.21
SF3B1-201ENST00000335508 VSIG10LQ86VR7 867 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 TMEM35BQ8NCS4 154 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 HAUS2Q9NVX0 235 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 IKBKGQ9Y6K9 419 aa7.46□□□□□ -1.21
SF3B1-201ENST00000335508 DENND3A2RUS2 1198 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 NKRFO15226 690 aaKnown RBP eCLIP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 PPFIA4O75335 1185 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 CYP3A4P08684 503 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 PPIL2Q13356 520 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 MAP1SQ66K74 1059 aaPredicted RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 PIGOQ8TEQ8 1089 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 ANKRD36BP1Q96IX9 119 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 CALR3Q96L12 384 aaKnown RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 FAM193BQ96PV7 902 aaPredicted RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 OLFML3Q9NRN5 406 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 TMEM260Q9NX78 707 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 SAR1BQ9Y6B6 198 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 FAM237AA0A1B0GTK4 181 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 PIK3CDO00329 1044 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 LRRC41Q15345 812 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 HADHQ16836 314 aaKnown RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 SYT10Q6XYQ8 523 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 METTL16Q86W50 562 aaKnown RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 RHOT2Q8IXI1 618 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 DYDC2Q96IM9 177 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 MOV10L1Q9BXT6 1211 aaKnown RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 AMFRQ9UKV5 643 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 LPXNO60711 386 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 CASP14P31944 242 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 GBP1P32455 592 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 COASYQ13057 564 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 PKN1Q16512 942 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 C4orf19Q8IY42 314 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 RNF10Q8N5U6 811 aaKnown RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 MSTO1Q9BUK6 570 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 MRPL4Q9BYD3 311 aaKnown RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 TMEM60Q9H2L4 133 aa7.46□□□□□ -1.22
SF3B1-201ENST00000335508 SAMSN1Q9NSI8 373 aaKnown RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 MKRN1Q9UHC7 482 aaKnown RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.46□□□□□ -1.22
SF3B1-201ENST00000335508 FAM205CA6NFA0 338 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 MIF4GDA9UHW6 222 aaKnown RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ATP1A3P13637 1013 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 GBP2P32456 591 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 RGS2P41220 211 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 IGBP1P78318 339 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 TFAMQ00059 246 aaKnown RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 SMC1AQ14683 1233 aaKnown RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 WHAMMP3Q1A5X7 153 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 METTL7BQ6UX53 244 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 FRMD5Q7Z6J6 570 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 KLRG1Q96E93 195 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 SPATA33Q96N06 139 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 LSM14BQ9BX40 385 aaKnown RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 STMN4Q9H169 189 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ATRNL1Q5VV63 1379 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 NALCNQ8IZF0 1738 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ATP2A2P16615 1042 aaKnown RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 TBXAS1P24557 533 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 FBXL13Q8NEE6 735 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ZKSCAN4Q969J2 545 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 EEF2KMTQ96G04 330 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 C12orf42Q96LP6 360 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 AGBL1Q96MI9 1066 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 FAM49AQ9H0Q0 323 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 HYOU1Q9Y4L1 999 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 UBE4BO95155 1302 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ERCC3P19447 782 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 RBM43Q6ZSC3 357 aaKnown RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 GPR161Q8N6U8 529 aaKnown RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 CDCA5Q96FF9 252 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ZNF830Q96NB3 372 aaPredicted RBP7.45□□□□□ -1.22
SF3B1-201ENST00000335508 ST7Q9NRC1 585 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 VWA5AO00534 786 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 KPNA6O60684 536 aa7.45□□□□□ -1.22
SF3B1-201ENST00000335508 MYL7Q01449 175 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms