RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 MSL1Q68DK7 614 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 POTEGQ6S5H5 508 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 POTEEQ6S8J3 1075 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 DPP8Q6V1X1 898 aaPredicted RBP15.89■□□□□ 0.13
SSBP3-201ENST00000326956 RASGEF1CQ8N431 466 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 CTNNBL1Q8WYA6 563 aaPredicted RBP15.89■□□□□ 0.13
SSBP3-201ENST00000326956 TATDN2Q93075 761 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 CHMP6Q96FZ7 201 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 TRIM51Q9BSJ1 452 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 NARFQ9UHQ1 456 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 INTUQ9ULD6 942 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 NAV1Q8NEY1 1877 aa15.89■□□□□ 0.13
SSBP3-201ENST00000326956 PPP1R12BO60237 982 aaPredicted RBP15.88■□□□□ 0.13
SSBP3-201ENST00000326956 SLC16A2P36021 539 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 STAT3P40763 770 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 SCTRP47872 440 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 PABPC4Q13310 644 aaKnown RBP eCLIP15.88■□□□□ 0.132e-66■■■■■ 36.3
SSBP3-201ENST00000326956 PPP2R5EQ16537 467 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 ADAT2Q7Z6V5 191 aaKnown RBP15.88■□□□□ 0.13
SSBP3-201ENST00000326956 NT5DC3Q86UY8 548 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 SFR1Q86XK3 245 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 FUKQ8N0W3 1084 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 CCDC197Q8NCU1 140 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 RBM46Q8TBY0 533 aaKnown RBP15.88■□□□□ 0.13
SSBP3-201ENST00000326956 HVCN1Q96D96 273 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 DNAJC5Q9H3Z4 198 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 SEPT11Q9NVA2 429 aaKnown RBP15.88■□□□□ 0.13
SSBP3-201ENST00000326956 ODF2LQ9ULJ1 636 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 DAAM1Q9Y4D1 1078 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 PCDHB13Q9Y5F0 798 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 DCDC2CA8MYV0 355 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 DNM1LO00429 736 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 PAEPP09466 180 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 GALCP54803 685 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 ZNF543Q08ER8 600 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 CLEC10AQ8IUN9 316 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 TRAF3IP3Q9Y228 551 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 SMIM23A6NLE4 172 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 PDXKO00764 312 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 TBCAO75347 108 aaKnown RBP15.88■□□□□ 0.13
SSBP3-201ENST00000326956 TTLL1O95922 423 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 ABCB4P21439 1286 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 CASP5P51878 434 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 NPEPPSP55786 919 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 DENND2CQ68D51 928 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 ZC3H3Q8IXZ2 948 aaKnown RBP15.88■□□□□ 0.13
SSBP3-201ENST00000326956 SLFN12Q8IYM2 578 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 MDM1Q8TC05 714 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 XPO6Q96QU8 1125 aaKnown RBP15.88■□□□□ 0.13
SSBP3-201ENST00000326956 MXD3Q9BW11 206 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 RASAL2Q9UJF2 1139 aa15.88■□□□□ 0.13
SSBP3-201ENST00000326956 C5orf60A6NFR6 353 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 SPDYE3A6NKU9 549 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 ZBTB5O15062 677 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 MED24O75448 989 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 DR1Q01658 176 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 MFSD14BQ5SR56 506 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 TTBK2Q6IQ55 1244 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 SLFN11Q7Z7L1 901 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 PNMA2Q9UL42 364 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L15C9J2P7 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L13C9JLJ4 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L11C9JVI0 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L18D6R9N7 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L22D6RA61 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L17D6RBQ6 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L19D6RCP7 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L20D6RJB6 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 MEIS1O00470 390 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 MPHOSPH10O00566 681 aaKnown RBP15.87■□□□□ 0.13
SSBP3-201ENST00000326956 DDX3XO00571 662 aaKnown RBP eCLIP15.87■□□□□ 0.13
SSBP3-201ENST00000326956 GCNT3O95395 438 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 NR3C1P04150 777 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 KRT13P13646 458 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 AKR1B1P15121 316 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L24Q0WX57 530 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 NFIXQ14938 502 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 EPHA7Q15375 998 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 PREPLQ4J6C6 727 aaPredicted RBP15.87■□□□□ 0.13
SSBP3-201ENST00000326956 GJB7Q6PEY0 223 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 USP17L6PQ6QN14 398 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 GLT8D2Q9H1C3 349 aa15.87■□□□□ 0.13
SSBP3-201ENST00000326956 THRAP3Q9Y2W1 955 aaKnown RBP15.87■□□□□ 0.13
SSBP3-201ENST00000326956 COL14A1Q05707 1796 aaKnown RBP15.87■□□□□ 0.13
SSBP3-201ENST00000326956 CCDC169A6NNP5 214 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 CLIC2O15247 247 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 SLC26A4O43511 780 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 BUB1BO60566 1050 aaPredicted RBP15.86■□□□□ 0.13
SSBP3-201ENST00000326956 AKAP3O75969 853 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 LMNB1P20700 586 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 TM4SF1P30408 202 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 SLC8A1P32418 973 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 CLK2P49760 499 aaKnown RBP15.86■□□□□ 0.13
SSBP3-201ENST00000326956 SLC12A3P55017 1021 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 GRAPQ13588 217 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 BYSLQ13895 437 aaKnown RBP15.86■□□□□ 0.13
SSBP3-201ENST00000326956 ARSHQ5FYA8 562 aa15.86■□□□□ 0.13
SSBP3-201ENST00000326956 GPATCH4Q5T3I0 446 aaKnown RBP15.86■□□□□ 0.13
SSBP3-201ENST00000326956 GRAPLQ8TC17 118 aaPredicted RBP15.86■□□□□ 0.13
SSBP3-201ENST00000326956 NEK9Q8TD19 979 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms