RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZNF385BQ569K4 471 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 ESPNLQ6ZVH7 1005 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 CXXC5Q7LFL8 322 aaKnown RBP4.59□□□□□ -1.67
HMGB1-201ENST00000326004 CNTD1Q8N815 330 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 FNIP1Q8TF40 1166 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 COG1Q8WTW3 980 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 ZBTB8AQ96BR9 441 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 AHCYL2Q96HN2 611 aaKnown RBP4.59□□□□□ -1.67
HMGB1-201ENST00000326004 ACAP3Q96P50 834 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 TUBGCP5Q96RT8 1024 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 CEP89Q96ST8 783 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 AMNQ9BXJ7 453 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 WNT8AQ9H1J5 351 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 CD320Q9NPF0 282 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 MSRAQ9UJ68 235 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 ZFP69BQ9UJL9 534 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 SMG5Q9UPR3 1016 aaKnown RBP4.59□□□□□ -1.67
HMGB1-201ENST00000326004 WASHC2AQ641Q2 1341 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 MAFGO15525 162 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 PLA2G1BP04054 148 aaKnown RBP4.58□□□□□ -1.68
HMGB1-201ENST00000326004 C1QTNF9P0C862 333 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 PI3P19957 117 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 APEX1P27695 318 aaKnown RBP4.58□□□□□ -1.68
HMGB1-201ENST00000326004 THBS2P35442 1172 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 RAP1GAPP47736 663 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 ERVK-21P61565 698 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 SLC6A3Q01959 620 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 ITKQ08881 620 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 MTMR1Q13613 665 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 SSPNQ14714 243 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 STILQ15468 1287 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 PKN1Q16512 942 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 BRDTQ58F21 947 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-201ENST00000326004 SLFN12LQ6IEE8 588 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 TTLL7Q6ZT98 887 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 SAPCD2Q86UD0 394 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 STAG1Q8WVM7 1258 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 ZSWIM3Q96MP5 696 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 OR10A5Q9H207 317 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 EPB41L4AQ9HCS5 686 aaPredicted RBP4.58□□□□□ -1.68
HMGB1-201ENST00000326004 KCND1Q9NSA2 647 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 CROTQ9UKG9 612 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 SPEF1Q9Y4P9 236 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 KCTD3Q9Y597 815 aa4.58□□□□□ -1.68
HMGB1-201ENST00000326004 ST20-MTHFSA0A0A6YYL1 179 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 KATNA1O75449 491 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 PRPF6O94906 941 aaKnown RBP4.57□□□□□ -1.68
HMGB1-201ENST00000326004 IL18BPO95998 194 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 GLRBP48167 497 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 BCAR1P56945 870 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 LINC00310P59036 64 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 ADCY2Q08462 1091 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 NFATC3Q12968 1075 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 SMAD4Q13485 552 aaKnown RBP4.57□□□□□ -1.68
HMGB1-201ENST00000326004 KCNA10Q16322 511 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 PRR31Q5SQ13 230 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 ZNF648Q5T619 568 aaPredicted RBP4.57□□□□□ -1.68
HMGB1-201ENST00000326004 SYDE2Q5VT97 1194 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 PRAMEF9Q5VWM5 478 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 KIAA1841Q6NSI8 718 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 KANSL1Q7Z3B3 1105 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 STK32CQ86UX6 486 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 CXorf67Q86X51 503 aaPredicted RBP4.57□□□□□ -1.68
HMGB1-201ENST00000326004 TMEM151BQ8IW70 566 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 RPGRQ92834 1020 aaKnown RBP4.57□□□□□ -1.68
HMGB1-201ENST00000326004 FERMT2Q96AC1 680 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 MTMR8Q96EF0 704 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 ZNF496Q96IT1 587 aaPredicted RBP4.57□□□□□ -1.68
HMGB1-201ENST00000326004 PWWP2AQ96N64 755 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 SYT3Q9BQG1 590 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 TACO1Q9BSH4 297 aaKnown RBP4.57□□□□□ -1.68
HMGB1-201ENST00000326004 POFUT1Q9H488 388 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 VTA1Q9NP79 307 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 TOPORSQ9NS56 1045 aaPredicted RBP4.57□□□□□ -1.68
HMGB1-201ENST00000326004 NTMQ9P121 344 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 FBXO10Q9UK96 956 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 TRHDEQ9UKU6 1024 aa4.57□□□□□ -1.68
HMGB1-201ENST00000326004 SH3D21A4FU49 640 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 H0Y858 1186 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 RPL13P26373 211 aaKnown RBP4.56□□□□□ -1.68
HMGB1-201ENST00000326004 TXKP42681 527 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 RGS3P49796 1198 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 MANFP55145 182 aaKnown RBP4.56□□□□□ -1.68
HMGB1-201ENST00000326004 IL13RA1P78552 427 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 MAP3K12Q12852 859 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 KLF1Q13351 362 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-201ENST00000326004 MOGSQ13724 837 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 MYBPC3Q14896 1274 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 RTP5Q14D33 572 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 PLEKHG6Q3KR16 790 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 VWA3BQ502W6 1294 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 KANK2Q63ZY3 851 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 LRSAM1Q6UWE0 723 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 STPG3Q8N7X2 389 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 LMBR1Q8WVP7 490 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 RSAD2Q8WXG1 361 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 DACT3Q96B18 629 aaPredicted RBP4.56□□□□□ -1.68
HMGB1-201ENST00000326004 MYL10Q9BUA6 226 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 ASPSCR1Q9BZE9 553 aa4.56□□□□□ -1.68
HMGB1-201ENST00000326004 TRIM8Q9BZR9 551 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms