RNA–Protein interactions for RNA: ENST00000306641.1

CSPG4P1Y-201, Transcript of CSPG4 pseudogene 1 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P1Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P1Y-201ENST00000306641 RGL1Q9NZL6 768 aa12.31□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 LRWD1Q9UFC0 647 aa12.31□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 PCDHA2Q9Y5H9 948 aa12.31□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 DNAH12Q6ZR08 3092 aa12.31□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 TET1Q8NFU7 2136 aa12.31□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 SMIM35A0A1B0GVV1 85 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 VWA3AA6NCI4 1184 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 RSPH10B2B2RC85 870 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 RSPH10BP0C881 870 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 ACTN1P12814 892 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 PDIA5Q14554 519 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 TRIM71Q2Q1W2 868 aaKnown RBP12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 ZNF618Q5T7W0 954 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 KRT79Q5XKE5 535 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 PLA2G4FQ68DD2 849 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 DEFB128Q7Z7B8 93 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 EXOC8Q8IYI6 725 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 SNX29Q8TEQ0 813 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CEP170P1Q96L14 293 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 MAP7D2Q96T17 732 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 NIFKQ9BYG3 293 aaKnown RBP12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 FTOQ9C0B1 505 aaKnown RBP eCLIP12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 IL23AQ9NPF7 189 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 AKT3Q9Y243 479 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 PPME1Q9Y570 386 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 KDM3AQ9Y4C1 1321 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CEP290O15078 2479 aa12.3□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 GBF1Q92538 1859 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 A0A1W2PPC1 479 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 ZBTB42B2RXF5 422 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 SLITRK3O94933 977 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 C22orf31O95567 290 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 MUTP22033 750 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 RPA1P27694 616 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CCT6AP40227 531 aaKnown RBP12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 POLGP54098 1239 aaPredicted RBP12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 MRPS6P82932 125 aaKnown RBP12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CEBPZQ03701 1054 aaKnown RBP12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 XKR9Q5GH70 373 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 IER5Q5VY09 327 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 EFCAB12Q6NXP0 572 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 FAM173BQ6P4H8 233 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 RPAINQ86UA6 219 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 TDHQ8IZJ6 230 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 NME8Q8N427 588 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 IGSF22Q8N9C0 903 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 SLC7A3Q8WY07 619 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 ZBTB10Q96DT7 871 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CDK5RAP3Q96JB5 506 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 POLR3CQ9BUI4 534 aaPredicted RBP12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CYP26B1Q9NR63 512 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 COLQQ9Y215 455 aaPredicted RBP12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 TRPV2Q9Y5S1 764 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CDY2AQ9Y6F7 541 aa12.29□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 TMEM150BA6NC51 233 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 GAS2O43903 313 aaKnown RBP12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 MED24O75448 989 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 LYPLA2O95372 231 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 ACRP10323 421 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 RFC5P40937 340 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 DNM2P50570 870 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CLCN3P51790 818 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 STK38Q15208 465 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 POTEGQ6S5H5 508 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 ANO5Q75V66 913 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 RASSF8Q8NHQ8 419 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 RNPC3Q96LT9 517 aaKnown RBP12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 AK8Q96MA6 479 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 SCLT1Q96NL6 688 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 NACC1Q96RE7 527 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 HSD17B14Q9BPX1 270 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 SH2D3AQ9BRG2 576 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 SUGCTQ9HAC7 445 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 ANKEF1Q9NU02 776 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 WRAP73Q9P2S5 460 aaPredicted RBP12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 CLIC4Q9Y696 253 aa12.28□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 PTPRSQ13332 1948 aa12.27□□□□□ -0.44
CSPG4P1Y-201ENST00000306641 ZBBXA8MT70 800 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 STBD1O95210 358 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 FGBP02675 491 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 LONP1P36776 959 aaKnown RBP12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 TXLNAP40222 546 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 NPEPPSP55786 919 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 MGAT3Q09327 533 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 TMEM62Q0P6H9 643 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 PKP1Q13835 747 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 TARBP2Q15633 366 aaKnown RBP12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ZRSR1Q15695 479 aaKnown RBP12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 FOXD4L6Q3SYB3 417 aaPredicted RBP12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 FAM26DQ5JW98 314 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CNKSR3Q6P9H4 555 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 FOXD4L3Q6VB84 417 aaPredicted RBP12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ZNF365Q70YC5 407 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 CATSPER3Q86XQ3 398 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ZNF710Q8N1W2 664 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 LRRC71Q8N4P6 559 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 USP28Q96RU2 1077 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 MTRQ99707 1265 aa12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.27□□□□□ -0.45
CSPG4P1Y-201ENST00000306641 ATP6V0A4Q9HBG4 840 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms