RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 H7C0S8 307 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 TRAF5O00463 557 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SRGAP2BP0DMP2 458 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CNTFP26441 200 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 MDH1P40925 334 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ZFP1Q6P2D0 407 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 MOXD1Q6UVY6 613 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 FAM43BQ6ZT52 329 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC80Q76M96 950 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 WDR75Q8IWA0 830 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SCFD1Q8WVM8 642 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 POMGNT1Q8WZA1 660 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 KRT35Q92764 455 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 DHX58Q96C10 678 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SERPINB12Q96P63 405 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 USP28Q96RU2 1077 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 EYA3Q99504 573 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 POLR3CQ9BUI4 534 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 VCPKMTQ9H867 229 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 TTLL3Q9Y4R7 772 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SQORQ9Y6N5 450 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CPDO75976 1380 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 PRR23AA6NEV1 266 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 HOXC6P09630 235 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 NSFP46459 744 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 MTA1Q13330 715 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 LRRC37BQ96QE4 947 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 NDEL1Q9GZM8 345 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 USP44Q9H0E7 712 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC134Q9H6E4 229 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 RNF216Q9NWF9 866 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 DNAJB4Q9UDY4 337 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ASIC3Q9UHC3 531 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 COMMD3-BMI1R4GMX3 469 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CEP170BQ9Y4F5 1589 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 RANBP6O60518 1105 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CBFA2T3O75081 653 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 PRDM1O75626 825 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 RPN1P04843 607 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 FCGR1AP12314 374 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SCG2P13521 617 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CDH2P19022 906 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 NFKBIAP25963 317 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 TKTP29401 623 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 DRG2P55039 364 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CENPCQ03188 943 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 WASHC5Q12768 1159 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ANGPT1Q15389 498 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 MTBPQ96DY7 904 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ABHD10Q9NUJ1 306 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SUCLA2Q9P2R7 463 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 DNM3Q9UQ16 869 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 MAGEB6P1A0A0J9YX57 407 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SMCO2A6NFE2 343 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ARHGAP42A6NI28 874 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 BIN1O00499 593 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 GSNP06396 782 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 PDIA3P30101 505 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ZNF135P52742 658 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 USH1GQ495M9 461 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SLC9C2Q5TAH2 1124 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 E4F1Q66K89 784 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 PDIK1LQ8N165 341 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 RNF217Q8TC41 542 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC127Q96BQ5 260 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ABHD8Q96I13 439 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 DDX56Q9NY93 547 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 DMRT2Q9Y5R5 561 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 CCDC78A2IDD5 438 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ZNF233A6NK53 670 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 DTNBO60941 627 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 KLHL2O95198 593 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 RGS2P41220 211 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 FANCBQ8NB91 859 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 DLG3Q92796 817 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 RPS6KC1Q96S38 1066 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ANLNQ9NQW6 1124 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SNX12Q9UMY4 172 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 STX8Q9UNK0 236 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 PA2G4Q9UQ80 394 aaKnown RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ERVV-1B6SEH8 477 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SEC24BO95487 1268 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SPIDRQ14159 915 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 SNX17Q15036 470 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 EAPPQ56P03 285 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-201ENST00000303395 FAM26FQ5R3K3 315 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 OLFML2BQ68BL8 750 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 BLIDQ8IZY5 108 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 STX19Q8N4C7 294 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ISCUQ9H1K1 167 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 TRPC7Q9HCX4 862 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 UTYO14607 1347 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 KPNA7A9QM74 516 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 KRT7P08729 469 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 TSPY3P0CV98 308 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 TSPY8P0CW00 308 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 ITIH2P19823 946 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 STILQ15468 1287 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 MFSD4BQ5TF39 518 aa5.61□□□□□ -1.51
SCN1A-201ENST00000303395 FGD4Q96M96 766 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms