RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MT-ND3P03897 115 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ESRRAP11474 423 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 GLE1Q53GS7 698 aaKnown RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ZMYND12Q9H0C1 365 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ANO9A1A5B4 782 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 TTLL1O95922 423 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 RFX6Q8HWS3 928 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 KCNG1Q9UIX4 513 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ACSL3O95573 720 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 NR2F2P24468 414 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 EIF4A3P38919 411 aaKnown RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 CCZ1BP86790 482 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 CCZ1P86791 482 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ANGPTL8Q6UXH0 198 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ATG9AQ7Z3C6 839 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 TMCO5AQ8N6Q1 288 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 OSBPL1AQ9BXW6 950 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 FAM208AQ9UK61 1670 aaKnown RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 KRT4P19013 534 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 HDAC4P56524 1084 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 LRRC47Q8N1G4 583 aaKnown RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 GCNT4Q9P109 453 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 LTN1O94822 1766 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 FOSP01100 380 aaPredicted RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 NBPF10Q6P3W6 841 aaKnown RBP10.59□□□□□ -0.71
COL6A3-201ENST00000295550 MB21D1Q8N884 522 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 ICA1LQ8NDH6 482 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 KCNB2Q92953 911 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 KIAA1024Q9UPX6 916 aa10.59□□□□□ -0.71
COL6A3-201ENST00000295550 RIMS1Q86UR5 1692 aaKnown RBP10.58□□□□□ -0.71
COL6A3-201ENST00000295550 GYG2O15488 501 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 MMEP08473 750 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 H2AFZP0C0S5 128 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 ACTN1P12814 892 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 TRPC1P48995 793 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 FOXO4P98177 505 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 RNF207Q6ZRF8 634 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 H2AFVQ71UI9 128 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 TRIM55Q9BYV6 548 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 ABCB6Q9NP58 842 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 SEC31BQ9NQW1 1179 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 TRPC5Q9UL62 973 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 PAIP2BQ9ULR5 123 aaKnown RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 LEMD3Q9Y2U8 911 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 H0YCG3 227 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 PPM1KQ8N3J5 372 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 HIPK4Q8NE63 616 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 RNF217Q8TC41 542 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 GIPC2Q8TF65 315 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 PBKQ96KB5 322 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 GIMAP4Q9NUV9 329 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 SERPING1P05155 500 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 FKBP3Q00688 224 aaKnown RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 MECOMQ03112 1051 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 CRLF3Q8IUI8 442 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 KCNV2Q8TDN2 545 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 USP40Q9NVE5 1235 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 A0A0G2JND7 137 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 M0QZ92 97 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 ATP2B4P23634 1241 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 OCRLQ01968 901 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 DEPDC1BQ8WUY9 529 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 DDX28Q9NUL7 540 aaKnown RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 TARSL2A2RTX5 802 aaKnown RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 AFPP02771 609 aaKnown RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 TBC1D1Q86TI0 1168 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 TRPV6Q9H1D0 765 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 ZFP69BQ9UJL9 534 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 PCDHA1Q9Y5I3 950 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 ARHGAP10A1A4S6 786 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 RASSF10A6NK89 507 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 PFKFB3Q16875 520 aaPredicted RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 PNPLA7Q6ZV29 1317 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 WBP4O75554 376 aaKnown RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 EIF3BP55884 814 aaKnown RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 MESDQ14696 234 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 METTL16Q86W50 562 aaKnown RBP10.58□□□□□ -0.72
COL6A3-201ENST00000295550 RMDN2Q96LZ7 410 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 CCPG1Q9ULG6 757 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 ARHGDIAP52565 204 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 ADCY2Q08462 1091 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 RDH13Q8NBN7 331 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 MMS19Q96T76 1030 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 PLAAQ9Y263 795 aa10.58□□□□□ -0.72
COL6A3-201ENST00000295550 DNAJC6O75061 913 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 PLEKHA8P1O95397 391 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 KRT26Q7Z3Y9 468 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 HACE1Q8IYU2 909 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 NEK9Q8TD19 979 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 RASGRP4Q8TDF6 673 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 TBCKQ8TEA7 893 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 PIGBQ92521 554 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 POTEB3A0JP26 581 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 DYNLL1P63167 89 aaKnown RBP10.57□□□□□ -0.72
COL6A3-201ENST00000295550 POTEBQ6S5H4 581 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 NOP9Q86U38 636 aaKnown RBP10.57□□□□□ -0.72
COL6A3-201ENST00000295550 TRIM11Q96F44 468 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 TNNC2P02585 160 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 AP2B1P63010 937 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 FAM178BQ8IXR5 827 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms