RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 NR5A1Q13285 461 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 TUBGCP2Q9BSJ2 902 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 TRPC1P48995 793 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 CCDC157Q569K6 752 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 CLIC6Q96NY7 704 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 MED23Q9ULK4 1368 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 UBA6A0AVT1 1052 aaPredicted RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 ANKRD49Q8WVL7 239 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 CNOT10Q9H9A5 744 aaKnown RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 LRRC74AQ0VAA2 488 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 MFN1Q8IWA4 741 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 PAPOLBQ9NRJ5 636 aaKnown RBP12.17□□□□□ -0.46
PTPN4-201ENST00000263708 HEY1Q9Y5J3 304 aa12.17□□□□□ -0.46
PTPN4-201ENST00000263708 LRRC31Q6UY01 552 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 PPP1R36Q96LQ0 422 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 NCKAP5LQ9HCH0 1330 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 SMARCA1P28370 1054 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 NLRP9Q7RTR0 991 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 FANCLQ9NW38 375 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 A0A1B0GW55 424 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 APOA1P02647 267 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 DUX4L2P0CJ85 424 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 DUX4L3P0CJ86 424 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 DUX4L4P0CJ87 422 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 DUX4L5P0CJ88 424 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 DUX4L6P0CJ89 424 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 DUX4L7P0CJ90 424 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 USP14P54578 494 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 AP1B1Q10567 949 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 ZMYND12Q9H0C1 365 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 DUX4Q9UBX2 424 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 ADCY3O60266 1144 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 FTCDO95954 541 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 COPB1P53618 953 aaKnown RBP12.16□□□□□ -0.46
PTPN4-201ENST00000263708 TSPY1Q01534 308 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 C11orf74Q86VG3 221 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 GPBP1L1Q9HC44 474 aaPredicted RBP12.16□□□□□ -0.46
PTPN4-201ENST00000263708 CACNA2D2Q9NY47 1150 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 IFT140Q96RY7 1462 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 C5orf58C9J3I9 102 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 COPEO14579 308 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 DR1Q01658 176 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 SLC10A5Q5PT55 438 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 GALNT17Q6IS24 598 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 ASZ1Q8WWH4 475 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 LARP4BQ92615 738 aaKnown RBP12.16□□□□□ -0.46
PTPN4-201ENST00000263708 FMO2Q99518 471 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 MSTO1Q9BUK6 570 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 AP1M1Q9BXS5 423 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 NGRNQ9NPE2 291 aaKnown RBP12.16□□□□□ -0.46
PTPN4-201ENST00000263708 PCDHGB4Q9UN71 923 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 ALS2CLQ60I27 953 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 CCNYL1Q8N7R7 359 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 SYT2Q8N9I0 419 aaPredicted RBP12.16□□□□□ -0.46
PTPN4-201ENST00000263708 CCDC151A5D8V7 595 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 BCAMP50895 628 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 SLC7A5Q01650 507 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 CUL1Q13616 776 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 ADNPQ9H2P0 1102 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 GDAQ9Y2T3 454 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 EIF2AK4Q9P2K8 1649 aaKnown RBP12.16□□□□□ -0.46
PTPN4-201ENST00000263708 PSAPP07602 524 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 HNRNPCP07910 306 aaKnown RBP eCLIP12.16□□□□□ -0.46
PTPN4-201ENST00000263708 ABCD1P33897 745 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 PPP3CCP48454 512 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 LRRC8EQ6NSJ5 796 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 PPP1R2P3Q6NXS1 205 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 MAGEB5Q9BZ81 275 aa12.16□□□□□ -0.46
PTPN4-201ENST00000263708 TJP3O95049 919 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 EPHB4P54760 987 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 ADCK2Q7Z695 626 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 NFX1Q12986 1120 aaKnown RBP12.15□□□□□ -0.46
PTPN4-201ENST00000263708 LRRC41Q15345 812 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 PDIK1LQ8N165 341 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 H0Y3Z8 333 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 LZTS3O60299 673 aaPredicted RBP12.15□□□□□ -0.46
PTPN4-201ENST00000263708 DDX5P17844 614 aaKnown RBP12.15□□□□□ -0.46
PTPN4-201ENST00000263708 BCL2L12Q9HB09 334 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 MAP4P27816 1152 aaKnown RBP12.15□□□□□ -0.46
PTPN4-201ENST00000263708 TRIM54Q9BYV2 358 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 PRG3Q9Y2Y8 225 aaPredicted RBP12.15□□□□□ -0.46
PTPN4-201ENST00000263708 MEI1Q5TIA1 1274 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 DAB1O75553 588 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 SEC24DO94855 1032 aaPredicted RBP12.15□□□□□ -0.46
PTPN4-201ENST00000263708 SPDYAQ5MJ70 313 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 PDXDC2PQ6P474 469 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 ICA1LQ8NDH6 482 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 HAUS4Q9H6D7 363 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 PPEF1O14829 653 aaPredicted RBP12.15□□□□□ -0.46
PTPN4-201ENST00000263708 GCP02774 474 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 CASP14P31944 242 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 SUPT20HL1Q3ZLR7 823 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 BTBD6Q96KE9 485 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 VPS11Q9H270 941 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 MAP10Q9P2G4 905 aa12.15□□□□□ -0.46
PTPN4-201ENST00000263708 DFFAO00273 331 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 GDF11O95390 407 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 TTLL1O95922 423 aa12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms