RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 WNK3Q9BYP7 1800 aa13.52□□□□□ -0.24
NUP88-201ENST00000225696 ATAD5Q96QE3 1844 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 CLIC2O15247 247 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 CAND2O75155 1236 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 GFPT2O94808 682 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 FGGP02679 453 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 AFPP02771 609 aaKnown RBP13.52□□□□□ -0.25
NUP88-201ENST00000225696 GPSM2P81274 684 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 ZNF543Q08ER8 600 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 GIT2Q14161 759 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 KRT71Q3SY84 523 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 CATSPER3Q86XQ3 398 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 RASGEF1CQ8N431 466 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 EIF1ADQ8N9N8 165 aaKnown RBP13.52□□□□□ -0.25
NUP88-201ENST00000225696 LNX1Q8TBB1 728 aaPredicted RBP13.52□□□□□ -0.25
NUP88-201ENST00000225696 U2AF1L4Q8WU68 220 aaKnown RBP13.52□□□□□ -0.25
NUP88-201ENST00000225696 GLG1Q92896 1179 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 CALR3Q96L12 384 aaKnown RBP13.52□□□□□ -0.25
NUP88-201ENST00000225696 REEP2Q9BRK0 252 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 MTFR1LQ9H019 292 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 DHX36Q9H2U1 1008 aaKnown RBP13.52□□□□□ -0.25
NUP88-201ENST00000225696 EPB41L4BQ9H329 900 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 ERVK-5Q9HDB9 667 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 CD209Q9NNX6 404 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 GGA2Q9UJY4 613 aa13.52□□□□□ -0.25
NUP88-201ENST00000225696 TNRC6CQ9HCJ0 1690 aaKnown RBP13.52□□□□□ -0.25
NUP88-201ENST00000225696 ARFGEF1Q9Y6D6 1849 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 BUB1BO60566 1050 aaPredicted RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 TAL1P17542 331 aaPredicted RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 GALCP54803 685 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 JAM2P57087 298 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 BIRC3Q13489 604 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 SHROOM1Q2M3G4 852 aaPredicted RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 EDRF1Q3B7T1 1238 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 ASPRV1Q53RT3 343 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 AADACL2Q6P093 401 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 SLC30A10Q6XR72 485 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 FUKQ8N0W3 1084 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 ARFGAP2Q8N6H7 521 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 CUL5Q93034 780 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 TATDN2Q93075 761 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 SLC35C1Q96A29 364 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 HES6Q96HZ4 224 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 NT5C3AQ9H0P0 336 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 PNMA2Q9UL42 364 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 ATF5Q9Y2D1 282 aaPredicted RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 SFI1A8K8P3 1242 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 hCG_1984214I3L0E3 225 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 GNPATO15228 680 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 H2AFZP0C0S5 128 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 SCTRP47872 440 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 ZNF211Q13398 564 aaPredicted RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 KNOP1Q1ED39 458 aaKnown RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 MFSD14BQ5SR56 506 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 CYB5D1Q6P9G0 228 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 H2AFVQ71UI9 128 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 ZNF804AQ7Z570 1209 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 PALB2Q86YC2 1186 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 GLYCTKQ8IVS8 523 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 ZNF713Q8N859 430 aaPredicted RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.51□□□□□ -0.25
NUP88-201ENST00000225696 SEC14L1Q92503 715 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 KCNMB3Q9NPA1 279 aa13.51□□□□□ -0.25
NUP88-201ENST00000225696 DDX4Q9NQI0 724 aaKnown RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 SUCLA2Q9P2R7 463 aaPredicted RBP13.51□□□□□ -0.25
NUP88-201ENST00000225696 IGKV6D-41A0A0C4DH26 115 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 GOLGA6L7A0A1B0GV03 622 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 C5orf60A6NFR6 353 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 SRRM3A6NNA2 597 aaPredicted RBP13.5□□□□□ -0.25
NUP88-201ENST00000225696 SPATA31C1P0DKV0 1188 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 XRCC5P13010 732 aaKnown RBP13.5□□□□□ -0.25
NUP88-201ENST00000225696 ABCB4P21439 1286 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 DRD4P21917 467 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 PRKCIP41743 596 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 SPIRE1Q08AE8 756 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 C10orf76Q5T2E6 689 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 RUFY4Q6ZNE9 571 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 EPM2AIP1Q7L775 607 aaPredicted RBP13.5□□□□□ -0.25
NUP88-201ENST00000225696 FRMD5Q7Z6J6 570 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 TXLNGYQ9BZA5 131 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 GCNT4Q9P109 453 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 TRAF3IP3Q9Y228 551 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 ASTN1O14525 1302 aa13.5□□□□□ -0.25
NUP88-201ENST00000225696 CHUKO15111 745 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 FLOT1O75955 427 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 PAEPP09466 180 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 SNAP25P60880 206 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 GABPAQ06546 454 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 PRPF4BQ13523 1007 aaKnown RBP13.49□□□□□ -0.25
NUP88-201ENST00000225696 GRAPQ13588 217 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 AGBL2Q5U5Z8 902 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 SLC35G2Q8TBE7 412 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 GRAPLQ8TC17 118 aaPredicted RBP13.49□□□□□ -0.25
NUP88-201ENST00000225696 ARHGEF26Q96DR7 871 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 A1CFQ9NQ94 594 aaKnown RBP13.49□□□□□ -0.25
NUP88-201ENST00000225696 TAS2R14Q9NYV8 317 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 PCDHB13Q9Y5F0 798 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 NHSQ6T4R5 1651 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 KDM3AQ9Y4C1 1321 aa13.49□□□□□ -0.25
NUP88-201ENST00000225696 DDX3YO15523 660 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms