RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 GUCY2DQ02846 1103 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MTX1Q13505 466 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 ANGPT1Q15389 498 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 KCTD6Q8NC69 237 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 SMCR8Q8TEV9 937 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 PYROXD1Q8WU10 500 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MAGOHBQ96A72 148 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 CCDC126Q96EE4 140 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 H0YIN7 160 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 COPS2P61201 443 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 NAA20P61599 178 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 BFSP2Q13515 415 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 TFDP2Q14188 446 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 PASD1Q8IV76 773 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 MFN1Q8IWA4 741 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 LSM14BQ9BX40 385 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 WNT8AQ9H1J5 351 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 ABCC4O15439 1325 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 H3BRJ5 948 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 TRIM59Q8IWR1 403 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 DNAAF3Q8N9W5 541 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 SNX19Q92543 992 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 TUBGCP3Q96CW5 907 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 BRD2P25440 801 aaKnown RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 ATXN3P54252 364 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 YWHAGP61981 247 aaKnown RBP eCLIP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 N4BP2L2Q92802 583 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 ACCSQ96QU6 501 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 FAM207AQ9NSI2 230 aaPredicted RBP6.49□□□□□ -1.37
VPS13D-201ENST00000011700 UNC13BO14795 1591 aa6.49□□□□□ -1.37
VPS13D-201ENST00000011700 CHD2O14647 1828 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ADCY3O60266 1144 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 MBD4O95243 580 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NPEPPSP55786 919 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 TSPY1Q01534 308 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 FAM26FQ5R3K3 315 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 LRRC31Q6UY01 552 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 IKBIPQ70UQ0 350 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 XPO6Q96QU8 1125 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 K7ENM7 598 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NR2F2P24468 414 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 FNTAP49354 379 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 KIAA1755Q5JYT7 1200 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 DNAJC24Q6P3W2 148 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 C11orf88Q6PI97 169 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 SKA2Q8WVK7 121 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 GLG1Q92896 1179 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 FAR2Q96K12 515 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ZSWIM6Q9HCJ5 1215 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 DBNLQ9UJU6 430 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ZMYND8Q9ULU4 1186 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NPR1P16066 1061 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NUP107P57740 925 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 TFCP2Q12800 502 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 MAPK6Q16659 721 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 PSMA8Q8TAA3 256 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 FSD1LQ9BXM9 530 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 PITPNM3Q9BZ71 974 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 MTIF3Q9H2K0 278 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 BCL2L12Q9HB09 334 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 CEP170Q5SW79 1584 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ADGRA3Q8IWK6 1321 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 SNAPC5O75971 98 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 FAM107AO95990 144 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 HADHAP40939 763 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 GCKRQ14397 625 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 PKN2Q16513 984 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NIM1KQ8IY84 436 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF654Q8IZM8 581 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 FAM89AQ96GI7 184 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 SGSM3Q96HU1 749 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ZNF556Q9HAH1 456 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 LEMD3Q9Y2U8 911 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ASXL3Q9C0F0 2248 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 TPRP12270 2363 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 RALBP11234 206 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 IBSPP21815 317 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 IFRD2Q12894 506 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 STILQ15468 1287 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ATP11CQ8NB49 1132 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 NBPF3Q9H094 633 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 APPL1Q9UKG1 709 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 TKTP29401 623 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 CYLC2Q14093 348 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 ICE2Q659A1 982 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 RSRC2Q7L4I2 434 aaKnown RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 EPM2AIP1Q7L775 607 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 RMND5BQ96G75 393 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 CNBD2Q96M20 576 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 OSBPL9Q96SU4 736 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 INO80Q9ULG1 1556 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 H0Y3Z8 333 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 OCM2P0CE71 109 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 OCMP0CE72 109 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 C16orf89Q6UX73 402 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 DDX42Q86XP3 938 aaKnown RBP eCLIP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 SPDYE1Q8NFV5 336 aaPredicted RBP6.48□□□□□ -1.37
VPS13D-201ENST00000011700 GINS4Q9BRT9 223 aa6.48□□□□□ -1.37
VPS13D-201ENST00000011700 GID8Q9NWU2 228 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms