RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 MAATS1Q7Z4T9 603 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 RPGRIP1Q96KN7 1286 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 AIPL1Q9NZN9 384 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 BUB1BO60566 1050 aaPredicted RBP11.7□□□□□ -0.54
USP28-201ENST00000003302 ZNF844Q08AG5 666 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 EPHA7Q15375 998 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 MSL1Q68DK7 614 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 PROM2Q8N271 834 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 KRT35Q92764 455 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 CCDC47Q96A33 483 aaKnown RBP11.7□□□□□ -0.54
USP28-201ENST00000003302 GCNT4Q9P109 453 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 FBXL5Q9UKA1 691 aa11.7□□□□□ -0.54
USP28-201ENST00000003302 RC3H1Q5TC82 1133 aaKnown RBP11.69□□□□□ -0.54
USP28-201ENST00000003302 LLGL2Q6P1M3 1020 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 POP1Q99575 1024 aaKnown RBP11.69□□□□□ -0.54
USP28-201ENST00000003302 MKI67P46013 3256 aaKnown RBP11.69□□□□□ -0.54
USP28-201ENST00000003302 FRMD3A2A2Y4 597 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 ATP2C2O75185 946 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 GCNT3O95395 438 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 LDHCP07864 332 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 TPCN2Q8NHX9 752 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 U2AF1L4Q8WU68 220 aaKnown RBP11.69□□□□□ -0.54
USP28-201ENST00000003302 FAM163AQ96GL9 167 aaPredicted RBP11.69□□□□□ -0.54
USP28-201ENST00000003302 FIZ1Q96SL8 496 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 SMIM23A6NLE4 172 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 EVI5O60447 810 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 BYSLQ13895 437 aaKnown RBP11.69□□□□□ -0.54
USP28-201ENST00000003302 ASIC2Q16515 512 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 ASPRV1Q53RT3 343 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 C2CD6Q53TS8 623 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 CFAP58Q5T655 872 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 GOLGA6L1Q8N7Z2 621 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 SPAG5Q96R06 1193 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 GLIS2Q9BZE0 524 aaPredicted RBP11.69□□□□□ -0.54
USP28-201ENST00000003302 EPB41L4BQ9H329 900 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 USP20Q9Y2K6 914 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 NR1D1P20393 614 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 GALCP54803 685 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 EPM2AIP1Q7L775 607 aaPredicted RBP11.69□□□□□ -0.54
USP28-201ENST00000003302 SCFD2Q8WU76 684 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 VAV3Q9UKW4 847 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 TELO2Q9Y4R8 837 aa11.69□□□□□ -0.54
USP28-201ENST00000003302 ANKRD63C9JTQ0 380 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 MYH11P35749 1972 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 ARHGAP44Q17R89 818 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 EXOC3L4Q17RC7 722 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 TTC31Q49AM3 519 aaPredicted RBP11.68□□□□□ -0.54
USP28-201ENST00000003302 SCARA3Q6AZY7 606 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 EMBQ6PCB8 327 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 ACER1Q8TDN7 264 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 THAP2Q9H0W7 228 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 DDX39AO00148 427 aaKnown RBP11.68□□□□□ -0.54
USP28-201ENST00000003302 POLRMTO00411 1230 aaKnown RBP11.68□□□□□ -0.54
USP28-201ENST00000003302 HSF2BPO75031 334 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 ATP8B4Q8TF62 1192 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 NR3C1P04150 777 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 FNTAP49354 379 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 CYP2J2P51589 502 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 KNOP1Q1ED39 458 aaKnown RBP11.68□□□□□ -0.54
USP28-201ENST00000003302 TSG101Q99816 390 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 FBXO28Q9NVF7 368 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 ARMCX3Q9UH62 379 aaPredicted RBP11.68□□□□□ -0.54
USP28-201ENST00000003302 GGT7Q9UJ14 662 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 PHF20L1A8MW92 1017 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 F5H6K3 240 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 KLRC3Q07444 240 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 PRPF4BQ13523 1007 aaKnown RBP11.68□□□□□ -0.54
USP28-201ENST00000003302 HYIQ5T013 277 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 PHLDB3Q6NSJ2 640 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 PHLDB2Q86SQ0 1253 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 DAAM2Q86T65 1068 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 MYCBPAPQ8TBZ2 947 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 BORCS6Q96GS4 357 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 PCIF1Q9H4Z3 704 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 NENFQ9UMX5 172 aa11.68□□□□□ -0.54
USP28-201ENST00000003302 NDUFB10O96000 172 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 CREB1P16220 341 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 ITIH3Q06033 890 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 SLFN13Q68D06 897 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 NT5DC3Q86UY8 548 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 TPH2Q8IWU9 490 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 CCT8L2Q96SF2 557 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 LTBP1Q14766 1721 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 DNM1LO00429 736 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 USP11P51784 963 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 IFT88Q13099 833 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 IKQ13123 557 aaPredicted RBP11.67□□□□□ -0.54
USP28-201ENST00000003302 RPS6KA1Q15418 735 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 PLEKHO2Q8TD55 490 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 PWWP2AQ96N64 755 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 ACBD3Q9H3P7 528 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 TDRD3Q9H7E2 651 aaKnown RBP11.67□□□□□ -0.54
USP28-201ENST00000003302 CD248Q9HCU0 757 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 CAPN7Q9Y6W3 813 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 FGGP02679 453 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 EPS15P42566 896 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 JAM2P57087 298 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 ZNF473Q8WTR7 871 aaKnown RBP11.67□□□□□ -0.54
USP28-201ENST00000003302 OSBPL7Q9BZF2 842 aa11.67□□□□□ -0.54
USP28-201ENST00000003302 SLC12A6Q9UHW9 1150 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms