RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 POTEDQ86YR6 584 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 HSCBQ8IWL3 235 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 MTMR9Q96QG7 549 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 MTIF3Q9H2K0 278 aaKnown RBP20.58■□□□□ 0.89
CLN3-259ENST00000637551 UNC45AQ9H3U1 944 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 SAMM50Q9Y512 469 aa20.58■□□□□ 0.89
CLN3-259ENST00000637551 FAM205CA6NFA0 338 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 IQCF3P0C7M6 154 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 CKBP12277 381 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 INSRRP14616 1297 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 GUCY1B3Q02153 619 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 SPIRE1Q08AE8 756 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 SWSAP1Q6NVH7 229 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 LRRC8DQ7L1W4 858 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 DHX38Q92620 1227 aaKnown RBP20.57■□□□□ 0.88
CLN3-259ENST00000637551 PPP1R12CQ9BZL4 782 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 SETD4Q9NVD3 440 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 PCDHA12Q9UN75 941 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 TRPC6Q9Y210 931 aa20.57■□□□□ 0.88
CLN3-259ENST00000637551 MARCH6O60337 910 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 DTNBO60941 627 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 CXCL10P02778 98 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 CYP2C18P33260 490 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 CHMP4BP1P59074 171 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 FAM26DQ5JW98 314 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 TTC38Q5R3I4 469 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 NME8Q8N427 588 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 NRBP2Q9NSY0 501 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 GABBR1Q9UBS5 961 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 PCDHA2Q9Y5H9 948 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 STK24Q9Y6E0 443 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 SQORQ9Y6N5 450 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 TTC28Q96AY4 2481 aa20.56■□□□□ 0.88
CLN3-259ENST00000637551 SMIM35A0A1B0GVV1 85 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 MAGEB2O15479 319 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 TREHO43280 583 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 EFCAB14O75071 495 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 P4HBP07237 508 aaKnown RBP20.55■□□□□ 0.88
CLN3-259ENST00000637551 CSF2RAP15509 400 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 MARK3P27448 753 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 PSMC5P62195 406 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 HIC1Q14526 733 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 EPHA7Q15375 998 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 XKR3Q5GH77 459 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 MARCH8Q5T0T0 291 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 RASIP1Q5U651 963 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 EXOC8Q8IYI6 725 aa20.55■□□□□ 0.88
CLN3-259ENST00000637551 KIF28PB7ZC32 967 aa20.54■□□□□ 0.88
CLN3-259ENST00000637551 BAIAP3O94812 1187 aa20.54■□□□□ 0.88
CLN3-259ENST00000637551 BMP15O95972 392 aa20.54■□□□□ 0.88
CLN3-259ENST00000637551 OATP04181 439 aa20.54■□□□□ 0.88
CLN3-259ENST00000637551 MUTP22033 750 aa20.54■□□□□ 0.88
CLN3-259ENST00000637551 PRPHP41219 470 aa20.54■□□□□ 0.88
CLN3-259ENST00000637551 QARSP47897 775 aaKnown RBP20.54■□□□□ 0.88
CLN3-259ENST00000637551 FOSBP53539 338 aa20.54■□□□□ 0.88
CLN3-259ENST00000637551 FAM161BQ96MY7 647 aa20.54■□□□□ 0.88
CLN3-259ENST00000637551 NIFKQ9BYG3 293 aaKnown RBP20.54■□□□□ 0.88
CLN3-259ENST00000637551 UMODL1Q5DID0 1318 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 KDM3AQ9Y4C1 1321 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 LOXHD1Q8IVV2 1947 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 LYPLA2O95372 231 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 OR52Z1P0C646 297 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 ACTN1P12814 892 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 ATP4AP20648 1035 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 PRKCEQ02156 737 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 TRAF7Q6Q0C0 670 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 C4orf19Q8IY42 314 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 USP38Q8NB14 1042 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 HERVK_113Q902F9 699 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 JPH2Q9BR39 696 aaPredicted RBP20.53■□□□□ 0.88
CLN3-259ENST00000637551 RAB34Q9BZG1 259 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 TTC12Q9H892 705 aaPredicted RBP20.53■□□□□ 0.88
CLN3-259ENST00000637551 SCN5AQ14524 2016 aa20.53■□□□□ 0.88
CLN3-259ENST00000637551 MUC3AQ02505 3323 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 ZBTB42B2RXF5 422 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 CHMP2AO43633 222 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 ZNF862O60290 1169 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 MCM7P33993 719 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 ZNF200P98182 395 aaPredicted RBP20.52■□□□□ 0.88
CLN3-259ENST00000637551 CDC42EP1Q00587 391 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 TMEM240Q5SV17 173 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 MTHFD1LQ6UB35 978 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 CKAP2LQ8IYA6 745 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 KCTD17Q8N5Z5 321 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 TET1Q8NFU7 2136 aa20.52■□□□□ 0.88
CLN3-259ENST00000637551 EVPLQ92817 2033 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 RSPH10B2B2RC85 870 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 RSPH10BP0C881 870 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 THPOP40225 353 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 FXR2P51116 673 aaKnown RBP eCLIP20.51■□□□□ 0.87
CLN3-259ENST00000637551 CCL23P55773 120 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 PDIA5Q14554 519 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 TARBP2Q15633 366 aaKnown RBP20.51■□□□□ 0.87
CLN3-259ENST00000637551 TMEM266Q2M3C6 531 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 ZNF618Q5T7W0 954 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 IER5Q5VY09 327 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 ARL6IP4Q66PJ3 421 aaKnown RBP20.51■□□□□ 0.87
CLN3-259ENST00000637551 MCTP1Q6DN14 999 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 APBB2Q92870 758 aa20.51■□□□□ 0.87
CLN3-259ENST00000637551 HSD17B14Q9BPX1 270 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms