RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 POTEBQ6S5H4 581 aa18.42■□□□□ 0.54
CLN3-246ENST00000636228 PABPC5Q96DU9 382 aaKnown RBP18.42■□□□□ 0.54
CLN3-246ENST00000636228 PADI3Q9ULW8 664 aa18.42■□□□□ 0.54
CLN3-246ENST00000636228 MRPL42Q9Y6G3 142 aaKnown RBP18.42■□□□□ 0.54
CLN3-246ENST00000636228 FAM86B1E9PN63 330 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 M0QZ92 97 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 ATG7O95352 703 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 FAM86B2P0C5J1 330 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 KLRC1P26715 233 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 GTF2F1P35269 517 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-246ENST00000636228 SREBF1P36956 1147 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 GATMP50440 423 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 HYAL1Q12794 435 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 MTHFD1LQ6UB35 978 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 CLP1Q92989 425 aaKnown RBP18.41■□□□□ 0.54
CLN3-246ENST00000636228 C11orf84Q9BUA3 381 aaPredicted RBP18.41■□□□□ 0.54
CLN3-246ENST00000636228 CELF4Q9BZC1 486 aaKnown RBP18.41■□□□□ 0.54
CLN3-246ENST00000636228 IGFLR1Q9H665 355 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 CDHR5Q9HBB8 845 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 GINS2Q9Y248 185 aa18.41■□□□□ 0.54
CLN3-246ENST00000636228 NCOR1O75376 2440 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 BACH1O14867 736 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 PPFIA3O75145 1194 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 LTBRP36941 435 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 PLA2G5P39877 138 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 DLX2Q07687 328 aaPredicted RBP18.4■□□□□ 0.54
CLN3-246ENST00000636228 APOBRQ0VD83 1088 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 PAK2Q13177 524 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 TSGA10IPQ3SY00 556 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 ABHD15Q6UXT9 468 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 TRMT1LQ7Z2T5 733 aaKnown RBP18.4■□□□□ 0.54
CLN3-246ENST00000636228 PLA2G4DQ86XP0 818 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 CRIPAKQ8N1N5 446 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 FAM122AQ96E09 287 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 TMX1Q9H3N1 280 aa18.4■□□□□ 0.54
CLN3-246ENST00000636228 COL4A6Q14031 1691 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 IGKV6D-21A0A0A0MT36 114 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 SMIM35A0A1B0GVV1 85 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 LINC01565O15544 149 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 DHX15O43143 795 aaKnown RBP18.39■□□□□ 0.53
CLN3-246ENST00000636228 GPR37L1O60883 481 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 DNAJB1P25685 340 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 FGD1P98174 961 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 KRT76Q01546 638 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 NFX1Q12986 1120 aaKnown RBP18.39■□□□□ 0.53
CLN3-246ENST00000636228 CAMK1Q14012 370 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 COL19A1Q14993 1142 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 PUS10Q3MIT2 529 aaKnown RBP18.39■□□□□ 0.53
CLN3-246ENST00000636228 SWSAP1Q6NVH7 229 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 CCDC60Q8IWA6 550 aaPredicted RBP18.39■□□□□ 0.53
CLN3-246ENST00000636228 TNPO1Q92973 898 aaKnown RBP18.39■□□□□ 0.53
CLN3-246ENST00000636228 PPP1R16BQ96T49 567 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 PLAGL2Q9UPG8 496 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 RWDD3Q9Y3V2 267 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 IGSF9BQ9UPX0 1349 aa18.39■□□□□ 0.53
CLN3-246ENST00000636228 hCG_1984214I3L0E3 225 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 MGEA5O60502 916 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 CDC45O75419 566 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 ATP4AP20648 1035 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 METAP2P50579 478 aaKnown RBP eCLIP18.38■□□□□ 0.53
CLN3-246ENST00000636228 AP3B2Q13367 1082 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 PFKFB3Q16875 520 aaPredicted RBP18.38■□□□□ 0.53
CLN3-246ENST00000636228 CENPQQ7L2Z9 268 aaPredicted RBP18.38■□□□□ 0.53
CLN3-246ENST00000636228 NPAS4Q8IUM7 802 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 NME8Q8N427 588 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 ZNF713Q8N859 430 aaPredicted RBP18.38■□□□□ 0.53
CLN3-246ENST00000636228 FTHL17Q9BXU8 183 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 LMAN2LQ9H0V9 348 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 ZNF302Q9NR11 478 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 NOC2LQ9Y3T9 749 aaKnown RBP18.38■□□□□ 0.53
CLN3-246ENST00000636228 SQORQ9Y6N5 450 aa18.38■□□□□ 0.53
CLN3-246ENST00000636228 IGLV3-22A0A075B6J6 115 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 HBP1O60381 514 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 RPLP2P05387 115 aaKnown RBP18.37■□□□□ 0.53
CLN3-246ENST00000636228 ITGB1P05556 798 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 SCG2P13521 617 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 KRT32Q14532 448 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 CTC1Q2NKJ3 1217 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 FAM160B1Q5W0V3 765 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 PDXDC2PQ6P474 469 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 Q6ZUG5 572 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 CMTR2Q8IYT2 770 aaKnown RBP18.37■□□□□ 0.53
CLN3-246ENST00000636228 KIAA0319LQ8IZA0 1049 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 ATP8B4Q8TF62 1192 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 TMEM40Q8WWA1 233 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 BRF1Q92994 677 aa18.37■□□□□ 0.53
CLN3-246ENST00000636228 ZBTB42B2RXF5 422 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 IPO5O00410 1097 aaKnown RBP18.36■□□□□ 0.53
CLN3-246ENST00000636228 MMP1P03956 469 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 STAG3L1P0CL83 205 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 IRS1P35568 1242 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 SLC26A2P50443 739 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 PKN1Q16512 942 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 NIPA1Q7RTP0 329 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 ADGRD2Q7Z7M1 963 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 CKAP2LQ8IYA6 745 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 KLHL23Q8NBE8 558 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 SPPL3Q8TCT6 385 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 RASGRP4Q8TDF6 673 aa18.36■□□□□ 0.53
CLN3-246ENST00000636228 CRYGNQ8WXF5 182 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms