RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 C11orf84Q9BUA3 381 aaPredicted RBP20.98■□□□□ 0.95
CLN3-241ENST00000635861 COL1A2P08123 1366 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 IGSF9BQ9UPX0 1349 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 POTEB3A0JP26 581 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 NCK2O43639 380 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 SCG2P13521 617 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 SETQ01105 290 aaPredicted RBP20.97■□□□□ 0.95
CLN3-241ENST00000635861 POTEBQ6S5H4 581 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 CRYGNQ8WXF5 182 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 ZNF689Q96CS4 500 aaPredicted RBP20.97■□□□□ 0.95
CLN3-241ENST00000635861 PGBD1Q96JS3 809 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 ZMYND12Q9H0C1 365 aa20.97■□□□□ 0.95
CLN3-241ENST00000635861 NSUN3Q9H649 340 aaKnown RBP20.97■□□□□ 0.95
CLN3-241ENST00000635861 FNDC1Q4ZHG4 1894 aaPredicted RBP20.97■□□□□ 0.95
CLN3-241ENST00000635861 HBP1O60381 514 aa20.96■□□□□ 0.95
CLN3-241ENST00000635861 NEFLP07196 543 aa20.96■□□□□ 0.95
CLN3-241ENST00000635861 COL19A1Q14993 1142 aa20.96■□□□□ 0.95
CLN3-241ENST00000635861 PLVAPQ9BX97 442 aa20.96■□□□□ 0.95
CLN3-241ENST00000635861 C6orf50Q9HD87 102 aa20.96■□□□□ 0.95
CLN3-241ENST00000635861 GNA11P29992 359 aa20.95■□□□□ 0.95
CLN3-241ENST00000635861 HSPA4P34932 840 aa20.95■□□□□ 0.95
CLN3-241ENST00000635861 CTNNB1P35222 781 aa20.95■□□□□ 0.95
CLN3-241ENST00000635861 BMPR1AP36894 532 aa20.95■□□□□ 0.95
CLN3-241ENST00000635861 ABHD15Q6UXT9 468 aa20.95■□□□□ 0.95
CLN3-241ENST00000635861 NEK9Q8TD19 979 aa20.95■□□□□ 0.95
CLN3-241ENST00000635861 PABPC5Q96DU9 382 aaKnown RBP20.95■□□□□ 0.95
CLN3-241ENST00000635861 CELF4Q9BZC1 486 aaKnown RBP20.95■□□□□ 0.95
CLN3-241ENST00000635861 FAM49AQ9H0Q0 323 aaPredicted RBP20.95■□□□□ 0.95
CLN3-241ENST00000635861 AGO3Q9H9G7 860 aaKnown RBP20.95■□□□□ 0.95
CLN3-241ENST00000635861 RNF216Q9NWF9 866 aaPredicted RBP20.95■□□□□ 0.95
CLN3-241ENST00000635861 TMEM260Q9NX78 707 aa20.95■□□□□ 0.95
CLN3-241ENST00000635861 DGKIO75912 1065 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 LINC00271P0C7V0 271 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 STAG3L1P0CL83 205 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 KCNA5P22460 613 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 CD52P31358 61 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 ADD1P35611 737 aaKnown RBP20.95■□□□□ 0.94
CLN3-241ENST00000635861 BTG3Q14201 252 aaPredicted RBP20.95■□□□□ 0.94
CLN3-241ENST00000635861 NAALADL2Q58DX5 795 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 ODR4Q5SWX8 454 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 MIS18BP1Q6P0N0 1132 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 BLOC1S2Q6QNY1 142 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 MTHFD1LQ6UB35 978 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 Q6ZUG5 572 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 PLA2G4DQ86XP0 818 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 NPAS4Q8IUM7 802 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 CMTR2Q8IYT2 770 aaKnown RBP20.95■□□□□ 0.94
CLN3-241ENST00000635861 REXO1Q8N1G1 1221 aaKnown RBP20.95■□□□□ 0.94
CLN3-241ENST00000635861 ATP8B4Q8TF62 1192 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 AGXT2Q9BYV1 514 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 TBC1D22BQ9NU19 505 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 NAP1L2Q9ULW6 460 aaPredicted RBP20.95■□□□□ 0.94
CLN3-241ENST00000635861 FAM50BQ9Y247 325 aa20.95■□□□□ 0.94
CLN3-241ENST00000635861 IGLV3-22A0A075B6J6 115 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 FAM86B1E9PN63 330 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 PRPF3O43395 683 aaKnown RBP20.94■□□□□ 0.94
CLN3-241ENST00000635861 FAM86B2P0C5J1 330 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 KRT76Q01546 638 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 PAK2Q13177 524 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 ZNF484Q5JVG2 852 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 SKAP1Q86WV1 359 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 CRIPAKQ8N1N5 446 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.94■□□□□ 0.94
CLN3-241ENST00000635861 BICD2Q8TD16 824 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 P2RX5Q93086 422 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 ZNF302Q9NR11 478 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 PADI3Q9ULW8 664 aa20.94■□□□□ 0.94
CLN3-241ENST00000635861 IPO5O00410 1097 aaKnown RBP20.93■□□□□ 0.94
CLN3-241ENST00000635861 BACH1O14867 736 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 DHX15O43143 795 aaKnown RBP20.93■□□□□ 0.94
CLN3-241ENST00000635861 EPB41L2O43491 1005 aaKnown RBP20.93■□□□□ 0.94
CLN3-241ENST00000635861 CCNE2O96020 404 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 APOBRQ0VD83 1088 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 TCEAL5Q5H9L2 206 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 JAKMIP3Q5VZ66 844 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 ZNF746Q6NUN9 644 aaPredicted RBP20.93■□□□□ 0.94
CLN3-241ENST00000635861 FAM178BQ8IXR5 827 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 SMAP1Q8IYB5 467 aaPredicted RBP20.93■□□□□ 0.94
CLN3-241ENST00000635861 CCDC148Q8NFR7 591 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 LINC01599Q8WXQ3 324 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 BRF1Q92994 677 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 JAKMIP1Q96N16 626 aaKnown RBP20.93■□□□□ 0.94
CLN3-241ENST00000635861 RNF26Q9BY78 433 aaPredicted RBP20.93■□□□□ 0.94
CLN3-241ENST00000635861 TCEAL9Q9UHQ7 104 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 SNX14Q9Y5W7 946 aa20.93■□□□□ 0.94
CLN3-241ENST00000635861 RBAK-RBAKDNI3L0D1 243 aa20.92■□□□□ 0.94
CLN3-241ENST00000635861 REC8O95072 547 aa20.92■□□□□ 0.94
CLN3-241ENST00000635861 KLRC1P26715 233 aa20.92■□□□□ 0.94
CLN3-241ENST00000635861 PSMA5P28066 241 aa20.92■□□□□ 0.94
CLN3-241ENST00000635861 AKAP17AQ02040 695 aaKnown RBP20.92■□□□□ 0.94
CLN3-241ENST00000635861 PTCRAQ6ISU1 281 aaPredicted RBP20.92■□□□□ 0.94
CLN3-241ENST00000635861 CCDC60Q8IWA6 550 aaPredicted RBP20.92■□□□□ 0.94
CLN3-241ENST00000635861 TRAPPC12Q8WVT3 735 aa20.92■□□□□ 0.94
CLN3-241ENST00000635861 ZNF577Q9BSK1 485 aa20.92■□□□□ 0.94
CLN3-241ENST00000635861 PLXNA4Q9HCM2 1894 aa20.91■□□□□ 0.94
CLN3-241ENST00000635861 GRXCR2A6NFK2 248 aa20.91■□□□□ 0.94
CLN3-241ENST00000635861 MMP1P03956 469 aa20.91■□□□□ 0.94
CLN3-241ENST00000635861 CIITAP33076 1130 aa20.91■□□□□ 0.94
CLN3-241ENST00000635861 PKN1Q16512 942 aa20.91■□□□□ 0.94
CLN3-241ENST00000635861 PDXDC2PQ6P474 469 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms