RNA–Protein interactions for RNA: ENST00000600778.3

SOX2-OT-233, SOX2 overlapping transcript, humanhuman

TSL 5

Gene SOX2-OT, Length 762 nt, Biotype sense overlapping.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-OT-233ENST00000600778 ERVK-21P61565 698 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 HTRA4P83105 476 aaPredicted RBP13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 LPIN1Q14693 890 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 C8orf34Q49A92 452 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 PRR16Q569H4 304 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 FAM160B1Q5W0V3 765 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 SWSAP1Q6NVH7 229 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 POTEBQ6S5H4 581 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 CCDC60Q8IWA6 550 aaPredicted RBP13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 TRIM22Q8IYM9 498 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 GDPD5Q8WTR4 605 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 ATXN2LQ8WWM7 1075 aaKnown RBP13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 PDRG1Q9NUG6 133 aa13.15□□□□□ -0.3
SOX2-OT-233ENST00000600778 CPLX1O14810 134 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 HBP1O60381 514 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 LPXNO60711 386 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 SLC26A2P50443 739 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 MRPS6P82932 125 aaKnown RBP13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 SETQ01105 290 aaPredicted RBP13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 TMEM62Q0P6H9 643 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 FBXO47Q5MNV8 452 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 IER5Q5VY09 327 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 MIS18BP1Q6P0N0 1132 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 PDXDC2PQ6P474 469 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 ASB2Q96Q27 587 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 YME1L1Q96TA2 773 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 C17orf80Q9BSJ5 609 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 SUGCTQ9HAC7 445 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 ZNF302Q9NR11 478 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 SH3GLB2Q9NR46 395 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 TBC1D22BQ9NU19 505 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 PCDHA2Q9Y5H9 948 aa13.14□□□□□ -0.31
SOX2-OT-233ENST00000600778 EDIL3O43854 480 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 DEXIO95424 95 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 RPLP2P05387 115 aaKnown RBP13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 KLRC1P26715 233 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 CIITAP33076 1130 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 ANAPC15P60006 121 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 MRPS5P82675 430 aaKnown RBP13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 CPLX2Q6PUV4 134 aaKnown RBP13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 MTHFD1LQ6UB35 978 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 TSHZ1Q6ZSZ6 1077 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 TRMT1LQ7Z2T5 733 aaKnown RBP13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 CKAP2LQ8IYA6 745 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 TCEAL9Q9UHQ7 104 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 TRPV2Q9Y5S1 764 aa13.13□□□□□ -0.31
SOX2-OT-233ENST00000600778 SIP14410 1827 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 SMIM35A0A1B0GVV1 85 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 M0QZ92 97 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 ENPP3O14638 875 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 ATP4AP20648 1035 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 CD52P31358 61 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 USP11P51784 963 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 TFF2Q03403 129 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 ZNF746Q6NUN9 644 aaPredicted RBP13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 NME8Q8N427 588 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 FBXO22Q8NEZ5 403 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 SP7Q8TDD2 431 aaPredicted RBP13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 TBCKQ8TEA7 893 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 ATP8B4Q8TF62 1192 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 IL17RAQ96F46 866 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 AIFM3Q96NN9 605 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 AGO3Q9H9G7 860 aaKnown RBP13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 LMCD1Q9NZU5 365 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 PCDHA4Q9UN74 947 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 SAMM50Q9Y512 469 aa13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 COL4A4P53420 1690 aaPredicted RBP13.12□□□□□ -0.31
SOX2-OT-233ENST00000600778 MSH4O15457 936 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 PSAPP07602 524 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 KRT76Q01546 638 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 SCRN1Q12765 414 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 EPC2Q52LR7 807 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 ZNF484Q5JVG2 852 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 SMAP1Q8IYB5 467 aaPredicted RBP13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 BLIDQ8IZY5 108 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 IL27Q8NEV9 243 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 LENG9Q96B70 501 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 CELF4Q9BZC1 486 aaKnown RBP13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 GABBR1Q9UBS5 961 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 PCDHA10Q9Y5I2 948 aa13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 MAFBQ9Y5Q3 323 aaPredicted RBP13.11□□□□□ -0.31
SOX2-OT-233ENST00000600778 COL1A2P08123 1366 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 DTNBO60941 627 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 PAK2Q13177 524 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 RTN4RL1Q86UN2 441 aaPredicted RBP13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 BBXQ8WY36 941 aaPredicted RBP13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 GJA10Q969M2 543 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 SAMD11Q96NU1 681 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 C22orf23Q9BZE7 217 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 SLKQ9H2G2 1235 aaPredicted RBP13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 PADI3Q9ULW8 664 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 KCNJ14Q9UNX9 436 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 GINS2Q9Y248 185 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 SQORQ9Y6N5 450 aa13.1□□□□□ -0.31
SOX2-OT-233ENST00000600778 MUC3AQ02505 3323 aa13.09□□□□□ -0.31
SOX2-OT-233ENST00000600778 WDR64B1ANS9 1081 aa13.09□□□□□ -0.31
SOX2-OT-233ENST00000600778 ZBTB42B2RXF5 422 aa13.09□□□□□ -0.31
SOX2-OT-233ENST00000600778 M0R2N6 131 aa13.09□□□□□ -0.31
SOX2-OT-233ENST00000600778 CHMP2AO43633 222 aa13.09□□□□□ -0.31
SOX2-OT-233ENST00000600778 CDKL5O76039 1030 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms