RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 C12orf60Q5U649 245 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 PPP4R3AQ6IN85 833 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 LRRC45Q96CN5 670 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 SLC12A6Q9UHW9 1150 aa20.04■□□□□ 0.8
UPF1-210ENST00000600689 LAMB1P07942 1786 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 ABCB4P21439 1286 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 PAX7P23759 505 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 GBP2P32456 591 aaPredicted RBP20.03■□□□□ 0.8
UPF1-210ENST00000600689 GKAP1Q5VSY0 366 aaPredicted RBP20.03■□□□□ 0.8
UPF1-210ENST00000600689 ZNF571Q7Z3V5 609 aaPredicted RBP20.03■□□□□ 0.8
UPF1-210ENST00000600689 DGKHQ86XP1 1220 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 RNF14Q9UBS8 474 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 LRRC63Q05C16 580 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 ZNF211Q13398 564 aaPredicted RBP20.03■□□□□ 0.8
UPF1-210ENST00000600689 ACCSLQ4AC99 568 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 CD302Q8IX05 232 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 MREGQ8N565 214 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 WDR66Q8TBY9 1149 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 RAD54LQ92698 747 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 MAGEF1Q9HAY2 307 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 GPCPD1Q9NPB8 672 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 SEPT11Q9NVA2 429 aaKnown RBP20.03■□□□□ 0.8
UPF1-210ENST00000600689 MCM8Q9UJA3 840 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 SPATA31A6Q5VVP1 1343 aa20.03■□□□□ 0.8
UPF1-210ENST00000600689 DLEC1Q9Y238 1755 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 H0YGN5 161 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 PSEN1P49768 467 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 ADAM9Q13443 819 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 TBC1D1Q86TI0 1168 aaPredicted RBP20.02■□□□□ 0.8
UPF1-210ENST00000600689 DONSONQ9NYP3 566 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 NFS1Q9Y697 457 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 NEBLO76041 1014 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 SHBGP04278 402 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 SERPINB2P05120 415 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 GNA11P29992 359 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 PREPLQ4J6C6 727 aaPredicted RBP20.02■□□□□ 0.8
UPF1-210ENST00000600689 TAX1BP1Q86VP1 789 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 ZMYND12Q9H0C1 365 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 PCDHGC5Q9Y5F6 944 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 CD2APQ9Y5K6 639 aa20.02■□□□□ 0.8
UPF1-210ENST00000600689 BUB1BO60566 1050 aaPredicted RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 CAND2O75155 1236 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 EZRP15311 586 aaKnown RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 KCNH2Q12809 1159 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 ALKBH5Q6P6C2 394 aaKnown RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 RUFY4Q6ZNE9 571 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 YTHDF3Q7Z739 585 aaKnown RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 THOC1Q96FV9 657 aaKnown RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 USP17L5A8MUK1 530 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 PGRMC1O00264 195 aaKnown RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 PPP1R2P41236 205 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 BYSLQ13895 437 aaKnown RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 ZNF804AQ7Z570 1209 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 U2AF1L4Q8WU68 220 aaKnown RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 SGSM3Q96HU1 749 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 CCDC38Q502W7 563 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 UBAP2Q5T6F2 1119 aaKnown RBP20.01■□□□□ 0.79
UPF1-210ENST00000600689 MGARPQ8TDB4 240 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 GLG1Q92896 1179 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 CD209Q9NNX6 404 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 KIAA1024Q9UPX6 916 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 L3MBTL1Q9Y468 752 aa20.01■□□□□ 0.79
UPF1-210ENST00000600689 VIMP08670 466 aaKnown RBP20■□□□□ 0.79
UPF1-210ENST00000600689 PPP2R5AQ15172 486 aa20■□□□□ 0.79
UPF1-210ENST00000600689 LRRC47Q8N1G4 583 aaKnown RBP20■□□□□ 0.79
UPF1-210ENST00000600689 FGGP02679 453 aa20■□□□□ 0.79
UPF1-210ENST00000600689 IQCDQ96DY2 449 aa20■□□□□ 0.79
UPF1-210ENST00000600689 ELAC2Q9BQ52 826 aaKnown RBP20■□□□□ 0.79
UPF1-210ENST00000600689 MLXIPLQ9NP71 852 aa20■□□□□ 0.79
UPF1-210ENST00000600689 BCS1LQ9Y276 419 aa20■□□□□ 0.79
UPF1-210ENST00000600689 MAST2Q6P0Q8 1798 aa20■□□□□ 0.79
UPF1-210ENST00000600689 PALM3A6NDB9 673 aaPredicted RBP19.99■□□□□ 0.79
UPF1-210ENST00000600689 KSR1Q8IVT5 923 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 EYA3Q99504 573 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 MTFR1LQ9H019 292 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 BCAS3Q9H6U6 928 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 OSGEPQ9NPF4 335 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 PVALEFA0A1B0GWK0 134 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 PLTPP55058 493 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 POLLQ9UGP5 575 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 SPDYE3A6NKU9 549 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 MEIS1O00470 390 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 NR2F2P24468 414 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 BTDP43251 543 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 RPAINQ86UA6 219 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 PSMD1Q99460 953 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 RTFDC1Q9BY42 306 aaPredicted RBP19.99■□□□□ 0.79
UPF1-210ENST00000600689 CHORDC1Q9UHD1 332 aaPredicted RBP19.99■□□□□ 0.79
UPF1-210ENST00000600689 SNX24Q9Y343 169 aa19.99■□□□□ 0.79
UPF1-210ENST00000600689 POTEB3A0JP26 581 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 POTECB2RU33 542 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 CHN1P15882 459 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 STAT3P40763 770 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 USP11P51784 963 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 MYO1EQ12965 1108 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 AADACL2Q6P093 401 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 POTEBQ6S5H4 581 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 DAGLBQ8NCG7 672 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 STAMBPL1Q96FJ0 436 aa19.98■□□□□ 0.79
UPF1-210ENST00000600689 TACO1Q9BSH4 297 aaKnown RBP19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms