RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 TMEM266Q2M3C6 531 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 LEXMQ3ZCV2 418 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 FAM160B1Q5W0V3 765 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 MTHFD1LQ6UB35 978 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 PLPPR4Q7Z2D5 763 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 CKAP2LQ8IYA6 745 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 ZNF713Q8N859 430 aaPredicted RBP20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 NSUN3Q9H649 340 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 PADI3Q9ULW8 664 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 PCDHA2Q9Y5H9 948 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 ADGRA3Q8IWK6 1321 aa20.01■□□□□ 0.79
SHKBP1-223ENST00000600552 FAM86B1E9PN63 330 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 GRM6O15303 877 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 FAM86B2P0C5J1 330 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 IL9P15248 144 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 KLRC1P26715 233 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 AKAP17AQ02040 695 aaKnown RBP20■□□□□ 0.79
SHKBP1-223ENST00000600552 NFX1Q12986 1120 aaKnown RBP20■□□□□ 0.79
SHKBP1-223ENST00000600552 PFKFB3Q16875 520 aaPredicted RBP20■□□□□ 0.79
SHKBP1-223ENST00000600552 SWSAP1Q6NVH7 229 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 PDXDC2PQ6P474 469 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 BLOC1S2Q6QNY1 142 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 LINC01599Q8WXQ3 324 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 KHSRPQ92945 711 aaKnown RBP eCLIP20■□□□□ 0.79
SHKBP1-223ENST00000600552 PHKBQ93100 1093 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 CELF4Q9BZC1 486 aaKnown RBP20■□□□□ 0.79
SHKBP1-223ENST00000600552 IGFLR1Q9H665 355 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 CD320Q9NPF0 282 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 ZNF302Q9NR11 478 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 CLDND1Q9NY35 253 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 TCEAL9Q9UHQ7 104 aa20■□□□□ 0.79
SHKBP1-223ENST00000600552 CCDC196A0A1B0GTZ2 297 aa19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 FAM86C2PA6NEL3 165 aa19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 CLK2P49760 499 aaKnown RBP19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 KRT76Q01546 638 aa19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 CLUL1Q15846 466 aa19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 RTN4RL1Q86UN2 441 aaPredicted RBP19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 ZNF577Q9BSK1 485 aa19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 C11orf84Q9BUA3 381 aaPredicted RBP19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 C6orf50Q9HD87 102 aa19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 ALG13Q9NP73 1137 aaKnown RBP19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 LRFN2Q9ULH4 789 aa19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 SNX14Q9Y5W7 946 aa19.99■□□□□ 0.79
SHKBP1-223ENST00000600552 TTC3P53804 2025 aa19.98■□□□□ 0.79
SHKBP1-223ENST00000600552 GATMP50440 423 aa19.98■□□□□ 0.79
SHKBP1-223ENST00000600552 MIS18BP1Q6P0N0 1132 aa19.98■□□□□ 0.79
SHKBP1-223ENST00000600552 ABHD15Q6UXT9 468 aa19.98■□□□□ 0.79
SHKBP1-223ENST00000600552 CCDC60Q8IWA6 550 aaPredicted RBP19.98■□□□□ 0.79
SHKBP1-223ENST00000600552 RASGRP4Q8TDF6 673 aa19.98■□□□□ 0.79
SHKBP1-223ENST00000600552 RALGAPA2Q2PPJ7 1873 aa19.98■□□□□ 0.79
SHKBP1-223ENST00000600552 EVPLQ92817 2033 aa19.98■□□□□ 0.79
SHKBP1-223ENST00000600552 SMIM35A0A1B0GVV1 85 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 IPO5O00410 1097 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 HBP1O60381 514 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 DGKIO75912 1065 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 ATG7O95352 703 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 RPLP2P05387 115 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 RB1P06400 928 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 CCT2P78371 535 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 PRR16Q569H4 304 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 GJD3Q8N144 294 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 REXO1Q8N1G1 1221 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 METTL13Q8N6R0 699 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 ATP8B4Q8TF62 1192 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 CCDC136Q96JN2 1154 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 SLC26A6Q9BXS9 759 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 FTHL17Q9BXU8 183 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 CDHR5Q9HBB8 845 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 RWDD3Q9Y3V2 267 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 SAMM50Q9Y512 469 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 MRPL42Q9Y6G3 142 aaKnown RBP19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 MUC3AQ02505 3323 aa19.97■□□□□ 0.79
SHKBP1-223ENST00000600552 STAG3L1P0CL83 205 aa19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 SPOUT1Q5T280 376 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 NIPA1Q7RTP0 329 aa19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 NPAS4Q8IUM7 802 aa19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 FAM178BQ8IXR5 827 aa19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 NME8Q8N427 588 aa19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 CCDC12Q8WUD4 166 aaPredicted RBP19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 PABPC5Q96DU9 382 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 LRFN3Q9BTN0 628 aa19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 NOC2LQ9Y3T9 749 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 IGSF9BQ9UPX0 1349 aa19.96■□□□□ 0.79
SHKBP1-223ENST00000600552 GRXCR2A6NFK2 248 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 DHX15O43143 795 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 PRPF3O43395 683 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 RPS6KA5O75582 802 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 RPS6KB1P23443 525 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 HSPA4P34932 840 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 SLC26A2P50443 739 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 RCAN1P53805 252 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 PKN1Q16512 942 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 ZNF484Q5JVG2 852 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 TMEM31Q5JXX7 168 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 TEX2Q8IWB9 1127 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 ZNF689Q96CS4 500 aaPredicted RBP19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 TMX1Q9H3N1 280 aa19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 RC3H2Q9HBD1 1191 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 NCOA5Q9HCD5 579 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-223ENST00000600552 MYH9P35579 1960 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms