RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 CXXC1Q9P0U4 656 aaPredicted RBP18.3■□□□□ 0.52
LSM4-206ENST00000600289 DDX25Q9UHL0 483 aaKnown RBP18.3■□□□□ 0.52
LSM4-206ENST00000600289 MBLAC1A4D2B0 266 aaPredicted RBP18.29■□□□□ 0.52
LSM4-206ENST00000600289 WDR64B1ANS9 1081 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 DDX39AO00148 427 aaKnown RBP18.29■□□□□ 0.52
LSM4-206ENST00000600289 TBX3O15119 743 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 PSMD10O75832 226 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 CKBP12277 381 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 SELPP16109 830 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 ZNF200P98182 395 aaPredicted RBP18.29■□□□□ 0.52
LSM4-206ENST00000600289 LETM2Q2VYF4 491 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 EARS2Q5JPH6 523 aaKnown RBP18.29■□□□□ 0.52
LSM4-206ENST00000600289 TRAF7Q6Q0C0 670 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 CCDC60Q8IWA6 550 aaPredicted RBP18.29■□□□□ 0.52
LSM4-206ENST00000600289 FBXO18Q8NFZ0 1043 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 RDM1Q8NG50 284 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 WNT8BQ93098 351 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 SCLYQ96I15 445 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 C8orf76Q96K31 380 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 TEKT3Q9BXF9 490 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 KCNMB3Q9NPA1 279 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 SETD4Q9NVD3 440 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 TET1Q8NFU7 2136 aa18.29■□□□□ 0.52
LSM4-206ENST00000600289 IGSF9BQ9UPX0 1349 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 LOXHD1Q8IVV2 1947 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 RRN3P2A6NIE6 340 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 BTBD18B2RXH4 712 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 TREHO43280 583 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 GAS7O60861 476 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 PSAPP07602 524 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 SFNP31947 248 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 PPFIA1Q13136 1202 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 PLCB4Q15147 1175 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 GRIK4Q16099 956 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 TMEM31Q5JXX7 168 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 LRCH2Q5VUJ6 765 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 LRRC8DQ7L1W4 858 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 RPAINQ86UA6 219 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 FAM184AQ8NB25 1140 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 HERVK_113Q902F9 699 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 ZNF302Q9NR11 478 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 PCDHA10Q9Y5I2 948 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 MAFBQ9Y5Q3 323 aaPredicted RBP18.28■□□□□ 0.52
LSM4-206ENST00000600289 WDFY4Q6ZS81 3184 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 COL1A2P08123 1366 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 ARID2Q68CP9 1835 aa18.28■□□□□ 0.52
LSM4-206ENST00000600289 MICAL3Q7RTP6 2002 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 GRXCR1A8MXD5 290 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 SLC37A4O43826 429 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 CXCL10P02778 98 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 RPLP2P05387 115 aaKnown RBP18.27■□□□□ 0.52
LSM4-206ENST00000600289 MARK3P27448 753 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 KCNQ1P51787 676 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 JAK3P52333 1124 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 TFF2Q03403 129 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 SAFBQ15424 915 aaKnown RBP eCLIP18.27■□□□□ 0.52
LSM4-206ENST00000600289 TAF2Q6P1X5 1199 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 ZNF365Q70YC5 407 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 ATP8B4Q8TF62 1192 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 FAM20AQ96MK3 541 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 FOXP1Q9H334 677 aaPredicted RBP18.27■□□□□ 0.52
LSM4-206ENST00000600289 KIF3AQ9Y496 699 aa18.27■□□□□ 0.52
LSM4-206ENST00000600289 FAM205CA6NFA0 338 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 BACH1O14867 736 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 CCNT1O60563 726 aaKnown RBP18.26■□□□□ 0.51
LSM4-206ENST00000600289 FGBP02675 491 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 ACRP10323 421 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 MARCH8Q5T0T0 291 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 MTIF3Q9H2K0 278 aaKnown RBP18.26■□□□□ 0.51
LSM4-206ENST00000600289 UNC45AQ9H3U1 944 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 DISC1Q9NRI5 854 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 TUBE1Q9UJT0 475 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 EVPLQ92817 2033 aa18.26■□□□□ 0.51
LSM4-206ENST00000600289 POTEB3A0JP26 581 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 HBP1O60381 514 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 INSRRP14616 1297 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 GPNMBQ14956 572 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 FAM26DQ5JW98 314 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 ZNF618Q5T7W0 954 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 SWSAP1Q6NVH7 229 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 PDXDC2PQ6P474 469 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 POTEBQ6S5H4 581 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 KHSRPQ92945 711 aaKnown RBP eCLIP18.25■□□□□ 0.51
LSM4-206ENST00000600289 UIMC1Q96RL1 719 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 VAV3Q9UKW4 847 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 TRPC6Q9Y210 931 aa18.25■□□□□ 0.51
LSM4-206ENST00000600289 GPR37L1O60883 481 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 ATP4AP20648 1035 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 IGFBP4P22692 258 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 THPOP40225 353 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 FOSBP53539 338 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 PPP2R5CQ13362 524 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 ORC2Q13416 577 aaPredicted RBP18.24■□□□□ 0.51
LSM4-206ENST00000600289 SLFN12Q8IYM2 578 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 BBXQ8WY36 941 aaPredicted RBP18.24■□□□□ 0.51
LSM4-206ENST00000600289 FAM167AQ96KS9 214 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 PCDHA2Q9Y5H9 948 aa18.24■□□□□ 0.51
LSM4-206ENST00000600289 NBNO60934 754 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 BAIAP3O94812 1187 aa18.23■□□□□ 0.51
LSM4-206ENST00000600289 ACTN1P12814 892 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms