RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 EPHA7Q15375 998 aa20.44■□□□□ 0.86
LIG1-216ENST00000598938 NCAPH2Q6IBW4 605 aa20.44■□□□□ 0.86
LIG1-216ENST00000598938 PPP1R13LQ8WUF5 828 aa20.44■□□□□ 0.86
LIG1-216ENST00000598938 RNPEPQ9H4A4 650 aa20.44■□□□□ 0.86
LIG1-216ENST00000598938 GABBR1Q9UBS5 961 aa20.44■□□□□ 0.86
LIG1-216ENST00000598938 RBM19Q9Y4C8 960 aaKnown RBP20.44■□□□□ 0.86
LIG1-216ENST00000598938 BMP15O95972 392 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 TIMP1P01033 207 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 MARK3P27448 753 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 HOXC8P31273 242 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 CHMP4BP1P59074 171 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 GRIN2CQ14957 1233 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 SF3A1Q15459 793 aaKnown RBP20.43■□□□□ 0.86
LIG1-216ENST00000598938 UGCGQ16739 394 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 FAM47CQ5HY64 1035 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 PDXDC2PQ6P474 469 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 FAM126BQ8IXS8 530 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 C7orf31Q8N865 590 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 FTOQ9C0B1 505 aaKnown RBP eCLIP20.43■□□□□ 0.86
LIG1-216ENST00000598938 ZNF576Q9H609 170 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 HDAC6Q9UBN7 1215 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 CEP131Q9UPN4 1083 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 CLIC4Q9Y696 253 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 MYH15Q9Y2K3 1946 aa20.43■□□□□ 0.86
LIG1-216ENST00000598938 POTEMA6NI47 508 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 SMIM10L2AP0DMW4 78 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 SMIM10L2BP0DMW5 78 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 ATP4AP20648 1035 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 TECP42680 631 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 PLCB4Q15147 1175 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 IL17AQ16552 155 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 TMEM266Q2M3C6 531 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 ARL6IP4Q66PJ3 421 aaKnown RBP20.42■□□□□ 0.86
LIG1-216ENST00000598938 TIFAQ96CG3 184 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 USP28Q96RU2 1077 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 DAXXQ9UER7 740 aaPredicted RBP20.42■□□□□ 0.86
LIG1-216ENST00000598938 GTF2IRD1Q9UHL9 959 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 TBX21Q9UL17 535 aa20.42■□□□□ 0.86
LIG1-216ENST00000598938 TNFRSF10AO00220 468 aa20.41■□□□□ 0.86
LIG1-216ENST00000598938 ZNF862O60290 1169 aa20.41■□□□□ 0.86
LIG1-216ENST00000598938 CD4P01730 458 aa20.41■□□□□ 0.86
LIG1-216ENST00000598938 PPIGQ13427 754 aaKnown RBP eCLIP20.41■□□□□ 0.862e-7■■□□□ 14.4
LIG1-216ENST00000598938 HIC1Q14526 733 aa20.41■□□□□ 0.86
LIG1-216ENST00000598938 PTPAQ15257 358 aa20.41■□□□□ 0.86
LIG1-216ENST00000598938 GDF6Q6KF10 455 aaPredicted RBP20.41■□□□□ 0.86
LIG1-216ENST00000598938 MFSD5Q6N075 450 aa20.41■□□□□ 0.86
LIG1-216ENST00000598938 DTHD1Q6ZMT9 781 aa20.41■□□□□ 0.86
LIG1-216ENST00000598938 IGSF22Q8N9C0 903 aa20.41■□□□□ 0.86
LIG1-216ENST00000598938 TLR3O15455 904 aaKnown RBP20.4■□□□□ 0.86
LIG1-216ENST00000598938 B4GALT4O60513 344 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 P4HBP07237 508 aaKnown RBP20.4■□□□□ 0.86
LIG1-216ENST00000598938 PDIA5Q14554 519 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 BANK1Q8NDB2 785 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 NEK9Q8TD19 979 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 ATP8B4Q8TF62 1192 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 ATXN2LQ8WWM7 1075 aaKnown RBP20.4■□□□□ 0.86
LIG1-216ENST00000598938 ATP6V0A1Q93050 837 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 DYDC2Q96IM9 177 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 ZNF396Q96N95 335 aaPredicted RBP20.4■□□□□ 0.86
LIG1-216ENST00000598938 GAS2L1Q99501 681 aaPredicted RBP20.4■□□□□ 0.86
LIG1-216ENST00000598938 HSD17B14Q9BPX1 270 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 EIF2AK1Q9BQI3 630 aaKnown RBP20.4■□□□□ 0.86
LIG1-216ENST00000598938 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.4■□□□□ 0.86
LIG1-216ENST00000598938 TRPV6Q9H1D0 765 aa20.4■□□□□ 0.86
LIG1-216ENST00000598938 MORC2Q9Y6X9 1032 aaPredicted RBP20.4■□□□□ 0.86
LIG1-216ENST00000598938 NRCAMQ92823 1304 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 POTEB3A0JP26 581 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 C17orf102A2RUQ5 167 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 QARSP47897 775 aaKnown RBP20.39■□□□□ 0.85
LIG1-216ENST00000598938 NASPP49321 788 aaPredicted RBP20.39■□□□□ 0.85
LIG1-216ENST00000598938 PSMC5P62195 406 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 ADAM17P78536 824 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 NUCB2P80303 420 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 PRKCEQ02156 737 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 PPFIA1Q13136 1202 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 RASIP1Q5U651 963 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 POTEBQ6S5H4 581 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 USP38Q8NB14 1042 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 TNPO1Q92973 898 aaKnown RBP20.39■□□□□ 0.85
LIG1-216ENST00000598938 FAM167AQ96KS9 214 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 RAB34Q9BZG1 259 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 TRMT13Q9NUP7 481 aaKnown RBP20.39■□□□□ 0.85
LIG1-216ENST00000598938 SETD4Q9NVD3 440 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 RGL1Q9NZL6 768 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 TRPC6Q9Y210 931 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 WDR81Q562E7 1941 aa20.39■□□□□ 0.85
LIG1-216ENST00000598938 NCOR1O75376 2440 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 HBP1O60381 514 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 SLITRK3O94933 977 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 STBD1O95210 358 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 OATP04181 439 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 INSRRP14616 1297 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 CEBPZQ03701 1054 aaKnown RBP20.38■□□□□ 0.85
LIG1-216ENST00000598938 ATL3Q6DD88 541 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 PSRC1Q6PGN9 363 aaPredicted RBP20.38■□□□□ 0.85
LIG1-216ENST00000598938 CKAP2LQ8IYA6 745 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 LMBR1Q8WVP7 490 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 BBXQ8WY36 941 aaPredicted RBP20.38■□□□□ 0.85
LIG1-216ENST00000598938 CTAGE1Q96RT6 745 aa20.38■□□□□ 0.85
LIG1-216ENST00000598938 LXNQ9BS40 222 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms