RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 MTHFD1LQ6UB35 978 aa16.31■□□□□ 0.2
VMP1-206ENST00000587945 CCDC60Q8IWA6 550 aaPredicted RBP16.31■□□□□ 0.2
VMP1-206ENST00000587945 REXO1Q8N1G1 1221 aaKnown RBP16.31■□□□□ 0.2
VMP1-206ENST00000587945 LINC01599Q8WXQ3 324 aa16.31■□□□□ 0.2
VMP1-206ENST00000587945 TRPV2Q9Y5S1 764 aa16.31■□□□□ 0.2
VMP1-206ENST00000587945 FAM160B1Q5W0V3 765 aa16.3■□□□□ 0.2
VMP1-206ENST00000587945 SWSAP1Q6NVH7 229 aa16.3■□□□□ 0.2
VMP1-206ENST00000587945 PDXDC2PQ6P474 469 aa16.3■□□□□ 0.2
VMP1-206ENST00000587945 RTN4RL1Q86UN2 441 aaPredicted RBP16.3■□□□□ 0.2
VMP1-206ENST00000587945 FIBCD1Q8N539 461 aa16.3■□□□□ 0.2
VMP1-206ENST00000587945 CCDC12Q8WUD4 166 aaPredicted RBP16.3■□□□□ 0.2
VMP1-206ENST00000587945 TNPO1Q92973 898 aaKnown RBP16.3■□□□□ 0.2
VMP1-206ENST00000587945 MRPL38Q96DV4 380 aaKnown RBP16.3■□□□□ 0.2
VMP1-206ENST00000587945 SAMD11Q96NU1 681 aa16.3■□□□□ 0.2
VMP1-206ENST00000587945 LARP6Q9BRS8 491 aaKnown RBP16.3■□□□□ 0.2
VMP1-206ENST00000587945 ZNF577Q9BSK1 485 aa16.3■□□□□ 0.2
VMP1-206ENST00000587945 ZNF302Q9NR11 478 aa16.3■□□□□ 0.2
VMP1-206ENST00000587945 VPS54Q9P1Q0 977 aa16.3■□□□□ 0.2
VMP1-206ENST00000587945 SMIM35A0A1B0GVV1 85 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 H3BNC9 293 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 M0QZ92 97 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 HBP1O60381 514 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 ATP4AP20648 1035 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 KLRC1P26715 233 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 GNA11P29992 359 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 SLC26A2P50443 739 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 TOB2Q14106 344 aaPredicted RBP16.29■□□□□ 0.2
VMP1-206ENST00000587945 TMEM266Q2M3C6 531 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 PRR16Q569H4 304 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 MIS18BP1Q6P0N0 1132 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 TRMT1LQ7Z2T5 733 aaKnown RBP16.29■□□□□ 0.2
VMP1-206ENST00000587945 ATP8B4Q8TF62 1192 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 RNF26Q9BY78 433 aaPredicted RBP16.29■□□□□ 0.2
VMP1-206ENST00000587945 CELF4Q9BZC1 486 aaKnown RBP16.29■□□□□ 0.2
VMP1-206ENST00000587945 UBE2ZQ9H832 354 aaPredicted RBP16.29■□□□□ 0.2
VMP1-206ENST00000587945 PADI3Q9ULW8 664 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 GINS2Q9Y248 185 aa16.29■□□□□ 0.2
VMP1-206ENST00000587945 COL4A4P53420 1690 aaPredicted RBP16.29■□□□□ 0.2
VMP1-206ENST00000587945 EDIL3O43854 480 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 RPLP2P05387 115 aaKnown RBP16.28■□□□□ 0.2
VMP1-206ENST00000587945 LINC00271P0C7V0 271 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 IFNAR1P17181 557 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 CTNNB1P35222 781 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 KRT76Q01546 638 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 PTPROQ16827 1216 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 RUFY3Q7L099 469 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 CKAP2LQ8IYA6 745 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 CDHR5Q9HBB8 845 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 RC3H2Q9HBD1 1191 aaKnown RBP16.28■□□□□ 0.2
VMP1-206ENST00000587945 ZSWIM6Q9HCJ5 1215 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 MICAL3Q7RTP6 2002 aa16.28■□□□□ 0.2
VMP1-206ENST00000587945 ADGRA3Q8IWK6 1321 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 IGSF9BQ9UPX0 1349 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.27■□□□□ 0.2
VMP1-206ENST00000587945 ZBTB42B2RXF5 422 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 IBSPP21815 317 aaPredicted RBP16.27■□□□□ 0.2
VMP1-206ENST00000587945 KCNA5P22460 613 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 EVCP57679 992 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 SETQ01105 290 aaPredicted RBP16.27■□□□□ 0.2
VMP1-206ENST00000587945 PAK2Q13177 524 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 BTG3Q14201 252 aaPredicted RBP16.27■□□□□ 0.2
VMP1-206ENST00000587945 TCEAL5Q5H9L2 206 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 MCTP2Q6DN12 878 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 KIAA0319LQ8IZA0 1049 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 NME8Q8N427 588 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 BANK1Q8NDB2 785 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 BICD2Q8TD16 824 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 LENG9Q96B70 501 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 ZNF689Q96CS4 500 aaPredicted RBP16.27■□□□□ 0.2
VMP1-206ENST00000587945 PPP1R16BQ96T49 567 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 UPF3BQ9BZI7 483 aaKnown RBP16.27■□□□□ 0.2
VMP1-206ENST00000587945 TMX1Q9H3N1 280 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 TBC1D22BQ9NU19 505 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 SQORQ9Y6N5 450 aa16.27■□□□□ 0.2
VMP1-206ENST00000587945 DGKIO75912 1065 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 CSPG5O95196 566 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 CIITAP33076 1130 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 BMPR1AP36894 532 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 NLRP5P59047 1200 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 NFX1Q12986 1120 aaKnown RBP16.26■□□□□ 0.19
VMP1-206ENST00000587945 ZNF484Q5JVG2 852 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 ZNF746Q6NUN9 644 aaPredicted RBP16.26■□□□□ 0.19
VMP1-206ENST00000587945 CCDC148Q8NFR7 591 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 FTHL17Q9BXU8 183 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 GABBR1Q9UBS5 961 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 MAFBQ9Y5Q3 323 aaPredicted RBP16.26■□□□□ 0.19
VMP1-206ENST00000587945 CYP46A1Q9Y6A2 500 aa16.26■□□□□ 0.19
VMP1-206ENST00000587945 KDM3AQ9Y4C1 1321 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 GRM6O15303 877 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 C22orf31O95567 290 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 PSAPP07602 524 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 GATMP50440 423 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 SSRP1Q08945 709 aaKnown RBP16.25■□□□□ 0.19
VMP1-206ENST00000587945 STK3Q13188 491 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 PAN2Q504Q3 1202 aaKnown RBP16.25■□□□□ 0.19
VMP1-206ENST00000587945 TIGD5Q53EQ6 642 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 NPAS4Q8IUM7 802 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 CRIPAKQ8N1N5 446 aa16.25■□□□□ 0.19
VMP1-206ENST00000587945 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.25■□□□□ 0.19
VMP1-206ENST00000587945 TMEM40Q8WWA1 233 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms