RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 IQSEC1Q6DN90 963 aa28.01■■■□□ 2.07
SHMT1-207ENST00000580002 HPS3Q969F9 1004 aa28.01■■■□□ 2.07
SHMT1-207ENST00000580002 DNAJC19Q96DA6 116 aa28.01■■■□□ 2.07
SHMT1-207ENST00000580002 DNAJC25Q9H1X3 360 aa28.01■■■□□ 2.07
SHMT1-207ENST00000580002 MAGEF1Q9HAY2 307 aa28.01■■■□□ 2.07
SHMT1-207ENST00000580002 CCDC192P0DO97 292 aa28■■■□□ 2.07
SHMT1-207ENST00000580002 TNFAIP2Q03169 654 aa28■■■□□ 2.07
SHMT1-207ENST00000580002 ANO5Q75V66 913 aa28■■■□□ 2.07
SHMT1-207ENST00000580002 C4orf19Q8IY42 314 aa28■■■□□ 2.07
SHMT1-207ENST00000580002 AFG1LQ8WV93 481 aa28■■■□□ 2.07
SHMT1-207ENST00000580002 RBSNQ9H1K0 784 aa28■■■□□ 2.07
SHMT1-207ENST00000580002 ZNF302Q9NR11 478 aa28■■■□□ 2.07
SHMT1-207ENST00000580002 LYPLA2O95372 231 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 GH1P01241 217 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 YWHABP31946 246 aaKnown RBP27.99■■■□□ 2.07
SHMT1-207ENST00000580002 ASIC1P78348 528 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 GSE1Q14687 1217 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 KMT5BQ4FZB7 885 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 ANO6Q4KMQ2 910 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 SMYD4Q8IYR2 804 aaPredicted RBP27.99■■■□□ 2.07
SHMT1-207ENST00000580002 MAFBQ9Y5Q3 323 aaPredicted RBP27.99■■■□□ 2.07
SHMT1-207ENST00000580002 NOP56O00567 594 aaKnown RBP27.99■■■□□ 2.07
SHMT1-207ENST00000580002 MUTP22033 750 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 MAP2K1Q02750 393 aaPredicted RBP27.99■■■□□ 2.07
SHMT1-207ENST00000580002 MORC3Q14149 939 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 RINT1Q6NUQ1 792 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 CCDC34Q96HJ3 373 aa27.99■■■□□ 2.07
SHMT1-207ENST00000580002 GNEQ9Y223 722 aaKnown RBP27.99■■■□□ 2.07
SHMT1-207ENST00000580002 IGSF9BQ9UPX0 1349 aa27.98■■■□□ 2.07
SHMT1-207ENST00000580002 SMC2O95347 1197 aa27.98■■■□□ 2.07
SHMT1-207ENST00000580002 NLRP12P59046 1061 aa27.98■■■□□ 2.07
SHMT1-207ENST00000580002 PRKCEQ02156 737 aa27.98■■■□□ 2.07
SHMT1-207ENST00000580002 RNF214Q8ND24 703 aa27.98■■■□□ 2.07
SHMT1-207ENST00000580002 BMP2KQ9NSY1 1161 aaPredicted RBP27.98■■■□□ 2.07
SHMT1-207ENST00000580002 WBP1LQ9NX94 342 aa27.98■■■□□ 2.07
SHMT1-207ENST00000580002 WDR81Q562E7 1941 aa27.97■■■□□ 2.07
SHMT1-207ENST00000580002 DYNC1LI2O43237 492 aaPredicted RBP27.97■■■□□ 2.07
SHMT1-207ENST00000580002 AMPD3Q01432 767 aa27.97■■■□□ 2.07
SHMT1-207ENST00000580002 LAMC2Q13753 1193 aa27.97■■■□□ 2.07
SHMT1-207ENST00000580002 RSPH10B2B2RC85 870 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 RSPH10BP0C881 870 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 RARRES1P49788 294 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 STAT5BP51692 787 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 CACNB2Q08289 660 aaPredicted RBP27.96■■■□□ 2.07
SHMT1-207ENST00000580002 GIT2Q14161 759 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 C1orf186Q6ZWK4 172 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 OR6J1Q8NGC5 347 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 ERO1AQ96HE7 468 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 GSDMAQ96QA5 445 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 CYBAP13498 195 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 IDEP14735 1019 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 MARK3P27448 753 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 STX1AQ16623 288 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 ATP6V0A1Q93050 837 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 GDAQ9Y2T3 454 aa27.96■■■□□ 2.07
SHMT1-207ENST00000580002 SFI1A8K8P3 1242 aa27.95■■■□□ 2.06
SHMT1-207ENST00000580002 MFSD14CQ5VZR4 134 aa27.95■■■□□ 2.06
SHMT1-207ENST00000580002 MAEAQ7L5Y9 396 aa27.95■■■□□ 2.06
SHMT1-207ENST00000580002 REEP2Q9BRK0 252 aa27.95■■■□□ 2.06
SHMT1-207ENST00000580002 ARHGEF35A5YM69 484 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 ADCY3O60266 1144 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 LGR5O75473 907 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 CD44P16070 742 aaKnown RBP27.94■■■□□ 2.06
SHMT1-207ENST00000580002 XKR9Q5GH70 373 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 EMID1Q96A84 441 aaPredicted RBP27.94■■■□□ 2.06
SHMT1-207ENST00000580002 BEGAINQ9BUH8 593 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 DBR1Q9UK59 544 aaKnown RBP27.94■■■□□ 2.06
SHMT1-207ENST00000580002 HOXD10P28358 340 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 CCND3P30281 292 aaPredicted RBP27.94■■■□□ 2.06
SHMT1-207ENST00000580002 IRF5Q13568 498 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 PADI6Q6TGC4 694 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 GLIS3Q8NEA6 775 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 PPTC7Q8NI37 304 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 GLG1Q92896 1179 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 ANO10Q9NW15 660 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 SEPT9Q9UHD8 586 aaPredicted RBP27.94■■■□□ 2.06
SHMT1-207ENST00000580002 FAM184BQ9ULE4 1060 aa27.94■■■□□ 2.06
SHMT1-207ENST00000580002 MYL1P05976 194 aa27.93■■■□□ 2.06
SHMT1-207ENST00000580002 CNNM4Q6P4Q7 775 aa27.93■■■□□ 2.06
SHMT1-207ENST00000580002 KCTD17Q8N5Z5 321 aa27.93■■■□□ 2.06
SHMT1-207ENST00000580002 AFAP1L1Q8TED9 768 aa27.93■■■□□ 2.06
SHMT1-207ENST00000580002 FGFBP2Q9BYJ0 223 aa27.93■■■□□ 2.06
SHMT1-207ENST00000580002 MAPK8IP1Q9UQF2 711 aa27.93■■■□□ 2.06
SHMT1-207ENST00000580002 USO1O60763 962 aaKnown RBP27.92■■■□□ 2.06
SHMT1-207ENST00000580002 KRT18P05783 430 aaKnown RBP27.92■■■□□ 2.06
SHMT1-207ENST00000580002 ZNF286BP0CG31 522 aa27.92■■■□□ 2.06
SHMT1-207ENST00000580002 CNGA1P29973 690 aa27.92■■■□□ 2.06
SHMT1-207ENST00000580002 STK4Q13043 487 aa27.92■■■□□ 2.06
SHMT1-207ENST00000580002 UNC13DQ70J99 1090 aa27.92■■■□□ 2.06
SHMT1-207ENST00000580002 RAET1EQ8TD07 263 aa27.92■■■□□ 2.06
SHMT1-207ENST00000580002 PANK4Q9NVE7 773 aa27.92■■■□□ 2.06
SHMT1-207ENST00000580002 TBC1D7Q9P0N9 293 aa27.92■■■□□ 2.06
SHMT1-207ENST00000580002 FSD2A1L4K1 749 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 RHOBTB3O94955 611 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 OATP04181 439 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 XRCC6P12956 609 aaKnown RBP eCLIP27.91■■■□□ 2.06
SHMT1-207ENST00000580002 SOX10P56693 466 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 BEX3Q00994 111 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 XKR3Q5GH77 459 aa27.91■■■□□ 2.06
SHMT1-207ENST00000580002 TLK2Q86UE8 772 aa27.91■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms