RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 C16orf92Q96LL3 132 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 WRNIP1Q96S55 665 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 ELF4Q99607 663 aaPredicted RBP6.73□□□□□ -1.33
NUP88-208ENST00000574087 PCIF1Q9H4Z3 704 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 GOLGA2P5Q9HBQ8 144 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 SPTLC3Q9NUV7 552 aa6.73□□□□□ -1.33
NUP88-208ENST00000574087 TGM5O43548 720 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 FKBP9O95302 570 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 EYA4O95677 639 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 PTX3P26022 381 aaPredicted RBP6.72□□□□□ -1.33
NUP88-208ENST00000574087 KPNA1P52294 538 aaPredicted RBP6.72□□□□□ -1.33
NUP88-208ENST00000574087 MLLT6P55198 1093 aaPredicted RBP6.72□□□□□ -1.33
NUP88-208ENST00000574087 SART3Q15020 963 aaKnown RBP6.72□□□□□ -1.33
NUP88-208ENST00000574087 PHF19Q5T6S3 580 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 TCERG1LQ5VWI1 586 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 TTLL7Q6ZT98 887 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 FKBP9P1Q75LS8 142 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 RTN4RL1Q86UN2 441 aaPredicted RBP6.72□□□□□ -1.33
NUP88-208ENST00000574087 GPR101Q96P66 508 aaPredicted RBP6.72□□□□□ -1.33
NUP88-208ENST00000574087 AMNQ9BXJ7 453 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 FAM126AQ9BYI3 521 aaPredicted RBP6.72□□□□□ -1.33
NUP88-208ENST00000574087 KCND1Q9NSA2 647 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 GALNT8Q9NY28 637 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 ARHGAP20Q9P2F6 1191 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 ZFP69BQ9UJL9 534 aa6.72□□□□□ -1.33
NUP88-208ENST00000574087 COL6A1P12109 1028 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 ZNF28P17035 718 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 IL2P60568 153 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 SMAD3P84022 425 aaKnown RBP6.71□□□□□ -1.34
NUP88-208ENST00000574087 OCRLQ01968 901 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 STRN3Q13033 797 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 SMAD2Q15796 467 aaKnown RBP6.71□□□□□ -1.34
NUP88-208ENST00000574087 VMACQ2NL98 169 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 CT47A1Q5JQC4 288 aaPredicted RBP6.71□□□□□ -1.34
NUP88-208ENST00000574087 KRTAP19-1Q8IUB9 90 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 ADGRG2Q8IZP9 1017 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 USP7Q93009 1102 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 IFT22Q9H7X7 185 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 INCENPQ9NQS7 918 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 UCKL1Q9NWZ5 548 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 CROTQ9UKG9 612 aa6.71□□□□□ -1.34
NUP88-208ENST00000574087 A0A1B0GTL3 188 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 PRAMEF22A3QJZ6 481 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 NEMP1O14524 444 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 ZEB2O60315 1214 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 CYP7B1O75881 506 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 CNGA1P29973 690 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 GLRBP48167 497 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 EPHA7Q15375 998 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 PRAMEF18Q5VWM3 479 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 ESRP1Q6NXG1 681 aaKnown RBP6.7□□□□□ -1.34
NUP88-208ENST00000574087 CARFQ8N187 725 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 STPG3Q8N7X2 389 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 HIPK4Q8NE63 616 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 ZSCAN18Q8TBC5 510 aaPredicted RBP6.7□□□□□ -1.34
NUP88-208ENST00000574087 ZCCHC14Q8WYQ9 949 aaKnown RBP6.7□□□□□ -1.34
NUP88-208ENST00000574087 SCYL1Q96KG9 808 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 TTC1Q99614 292 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 KRTAP4-12Q9BQ66 201 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 TACO1Q9BSH4 297 aaKnown RBP6.7□□□□□ -1.34
NUP88-208ENST00000574087 ZMAT4Q9H898 229 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 EMC7Q9NPA0 242 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 TOMM22Q9NS69 142 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 NTMQ9P121 344 aa6.7□□□□□ -1.34
NUP88-208ENST00000574087 KNG1P01042 644 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 CHGBP05060 677 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 IL13P35225 146 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 ID4P47928 161 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 SARSP49591 514 aaKnown RBP6.69□□□□□ -1.34
NUP88-208ENST00000574087 PHC1P78364 1004 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 NFKB2Q00653 900 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 STILQ15468 1287 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 PASD1Q8IV76 773 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 ERCC4Q92889 916 aaPredicted RBP6.69□□□□□ -1.34
NUP88-208ENST00000574087 BTBD2Q9BX70 525 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 KRTAP9-2Q9BYQ4 174 aa6.69□□□□□ -1.34
NUP88-208ENST00000574087 ADAMTS20P59510 1910 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 DDX3XO00571 662 aaKnown RBP eCLIP6.68□□□□□ -1.34
NUP88-208ENST00000574087 BRINP1O60477 761 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 ECE1P42892 770 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 ALDH6A1Q02252 535 aaKnown RBP6.68□□□□□ -1.34
NUP88-208ENST00000574087 LRRC32Q14392 662 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 GPR158Q5T848 1215 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 LRSAM1Q6UWE0 723 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 NME9Q86XW9 330 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 ZZZ3Q8IYH5 903 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 FOXB1Q99853 325 aa6.68□□□□□ -1.34
NUP88-208ENST00000574087 ANKRD62A6NC57 917 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 FBXO21O94952 628 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 PRLP01236 227 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 SLURP1P55000 103 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 JAG1P78504 1218 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 IL13RA1P78552 427 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 AMPD3Q01432 767 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 TERF2Q15554 542 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 ATP13A4Q4VNC1 1196 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 KANK2Q63ZY3 851 aa6.67□□□□□ -1.34
NUP88-208ENST00000574087 TRMT10BQ6PF06 316 aaKnown RBP6.67□□□□□ -1.34
NUP88-208ENST00000574087 DPP8Q6V1X1 898 aaPredicted RBP6.67□□□□□ -1.34
NUP88-208ENST00000574087 LCNL1Q6ZST4 164 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms