RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 JAKMIP3Q5VZ66 844 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 ERICH6BQ5W0A0 696 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 FAM117BQ6P1L5 589 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.06□□□□□ -0.64
CIITA-207ENST00000571545 RUFY4Q6ZNE9 571 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 ADAMTS19Q8TE59 1207 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 ATP8B4Q8TF62 1192 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 GDPD5Q8WTR4 605 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 DNAJB3Q8WWF6 145 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 HLA-CQ95604 372 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 PGBD1Q96JS3 809 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 FAM167AQ96KS9 214 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 SLC26A6Q9BXS9 759 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 TM6SF1Q9BZW5 370 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 ZNF302Q9NR11 478 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 TRPV2Q9Y5S1 764 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 CDY2AQ9Y6F7 541 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 PRUNE2Q8WUY3 3088 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 KDM3AQ9Y4C1 1321 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 EYSQ5T1H1 3165 aa11.06□□□□□ -0.64
CIITA-207ENST00000571545 IGKV6D-21A0A0A0MT36 114 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 FAM86B1E9PN63 330 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 DEXIO95424 95 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 PSAPP07602 524 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 FAM86B2P0C5J1 330 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 STAG3L1P0CL83 205 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 CPA1P15085 419 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 CIITAP33076 1130 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 SSRP1Q08945 709 aaKnown RBP11.05□□□□□ -0.64
CIITA-207ENST00000571545 LPIN1Q14693 890 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 PLCB4Q15147 1175 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 PKN1Q16512 942 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 TCTN1Q2MV58 587 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 ZNF484Q5JVG2 852 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 FBXO47Q5MNV8 452 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 MARCH8Q5T0T0 291 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 GALNT17Q6IS24 598 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 PDXDC2PQ6P474 469 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 TMCO2Q7Z6W1 182 aaPredicted RBP11.05□□□□□ -0.64
CIITA-207ENST00000571545 CKAP2LQ8IYA6 745 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 CYP2W1Q8TAV3 490 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 CRYGNQ8WXF5 182 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 BBXQ8WY36 941 aaPredicted RBP11.05□□□□□ -0.64
CIITA-207ENST00000571545 PHKBQ93100 1093 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 IL17RAQ96F46 866 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 ZNF274Q96GC6 653 aaPredicted RBP11.05□□□□□ -0.64
CIITA-207ENST00000571545 UHRF1Q96T88 793 aaPredicted RBP11.05□□□□□ -0.64
CIITA-207ENST00000571545 PCYT2Q99447 389 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 FAM49AQ9H0Q0 323 aaPredicted RBP11.05□□□□□ -0.64
CIITA-207ENST00000571545 SUGCTQ9HAC7 445 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 ZSWIM6Q9HCJ5 1215 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 PRDM6Q9NQX0 595 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 TMEM260Q9NX78 707 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 MTUS1Q9ULD2 1270 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 ADGRA3Q8IWK6 1321 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 IGSF9BQ9UPX0 1349 aa11.05□□□□□ -0.64
CIITA-207ENST00000571545 TTC3P53804 2025 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 NCOR1O75376 2440 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 IGLV3-22A0A075B6J6 115 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.04□□□□□ -0.64
CIITA-207ENST00000571545 WDR64B1ANS9 1081 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 RFXAPO00287 272 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 LPXNO60711 386 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 ARHGEF15O94989 841 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 UPP2O95045 317 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 RB1P06400 928 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 XBP1P17861 261 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 PDIA3P30101 505 aaKnown RBP11.04□□□□□ -0.64
CIITA-207ENST00000571545 SFNP31947 248 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 USP11P51784 963 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 JAK3P52333 1124 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 NLRP5P59047 1200 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 PAK2Q13177 524 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 NTRK3Q16288 839 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 MTHFD1LQ6UB35 978 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 ABHD15Q6UXT9 468 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 FIBCD1Q8N539 461 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 MRPL38Q96DV4 380 aaKnown RBP11.04□□□□□ -0.64
CIITA-207ENST00000571545 C11orf84Q9BUA3 381 aaPredicted RBP11.04□□□□□ -0.64
CIITA-207ENST00000571545 TELO2Q9Y4R8 837 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 SAMM50Q9Y512 469 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 PCDHA10Q9Y5I2 948 aa11.04□□□□□ -0.64
CIITA-207ENST00000571545 C5orf67F2Z3F1 127 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 H3BNC9 293 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 DDX39AO00148 427 aaKnown RBP11.03□□□□□ -0.64
CIITA-207ENST00000571545 MAGEB2O15479 319 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 NCK2O43639 380 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 TMOD1P28289 359 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 ANKRD1Q15327 319 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 EPC2Q52LR7 807 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 PRR16Q569H4 304 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 NPAS4Q8IUM7 802 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 CCDC60Q8IWA6 550 aaPredicted RBP11.03□□□□□ -0.64
CIITA-207ENST00000571545 TMEM192Q8IY95 271 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 RDM1Q8NG50 284 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 RIT2Q99578 217 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 C17orf80Q9BSJ5 609 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 PLVAPQ9BX97 442 aa11.03□□□□□ -0.64
CIITA-207ENST00000571545 CELF4Q9BZC1 486 aaKnown RBP11.03□□□□□ -0.64
CIITA-207ENST00000571545 LMAN2LQ9H0V9 348 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms