RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 E2F7Q96AV8 911 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 EXOC2Q96KP1 924 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 LRRC37BQ96QE4 947 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 SSBP3Q9BWW4 388 aaPredicted RBP4.39□□□□□ -1.71
VPS35-207ENST00000568191 BTBD2Q9BX70 525 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 MRPL4Q9BYD3 311 aaKnown RBP4.39□□□□□ -1.71
VPS35-207ENST00000568191 MSL2Q9HCI7 577 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 KCNH7Q9NS40 1196 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 SNTG2Q9NY99 539 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 SRRDQ9UH36 339 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 CBLCQ9ULV8 474 aa4.39□□□□□ -1.71
VPS35-207ENST00000568191 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.38□□□□□ -1.71
VPS35-207ENST00000568191 TCRBV5S4A2TA0A5A2 114 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 SLC12A8A0AV02 714 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 PATE3B3GLJ2 98 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 ZNF561-AS1K7EIQ3 104 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 GPR42O15529 346 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 CNOT4O95628 575 aaKnown RBP4.38□□□□□ -1.71
VPS35-207ENST00000568191 IL18BPO95998 194 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 HMGCRP04035 888 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 AMY2AP04746 511 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 AMY2BP19961 511 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 AOAHP28039 575 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 GDF5P43026 501 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 KRTAP10-2P60368 255 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 MAP3K12Q12852 859 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 RASA3Q14644 834 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 ARHGAP44Q17R89 818 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 ZNF585AQ6P3V2 769 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 GPR155Q7Z3F1 870 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 DDX53Q86TM3 631 aaKnown RBP4.38□□□□□ -1.71
VPS35-207ENST00000568191 C2orf69Q8N8R5 385 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 HIPK4Q8NE63 616 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 DNERQ8NFT8 737 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 NEIL1Q96FI4 390 aaPredicted RBP4.38□□□□□ -1.71
VPS35-207ENST00000568191 CELF4Q9BZC1 486 aaKnown RBP4.38□□□□□ -1.71
VPS35-207ENST00000568191 C12orf65Q9H3J6 166 aaKnown RBP4.38□□□□□ -1.71
VPS35-207ENST00000568191 PUF60Q9UHX1 559 aaKnown RBP4.38□□□□□ -1.71
VPS35-207ENST00000568191 NR2E1Q9Y466 385 aa4.38□□□□□ -1.71
VPS35-207ENST00000568191 SCDO00767 359 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 FOXP2O15409 715 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 C4BPAP04003 597 aaKnown RBP4.37□□□□□ -1.71
VPS35-207ENST00000568191 TNFRSF1AP19438 455 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 CR2P20023 1033 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 RPS19P39019 145 aaKnown RBP4.37□□□□□ -1.71
VPS35-207ENST00000568191 ECE1P42892 770 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 KCNQ1P51787 676 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 TOP3AQ13472 1001 aaPredicted RBP4.37□□□□□ -1.71
VPS35-207ENST00000568191 PRKD1Q15139 912 aaPredicted RBP4.37□□□□□ -1.71
VPS35-207ENST00000568191 TAX1BP1Q86VP1 789 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 RTKN2Q8IZC4 609 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 CISD2Q8N5K1 135 aaKnown RBP4.37□□□□□ -1.71
VPS35-207ENST00000568191 WNK4Q96J92 1243 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 ZDHHC5Q9C0B5 715 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 SLC52A2Q9HAB3 445 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 ZFR2Q9UPR6 939 aaKnown RBP4.37□□□□□ -1.71
VPS35-207ENST00000568191 TESMINQ9Y4I5 508 aa4.37□□□□□ -1.71
VPS35-207ENST00000568191 A0A0G2JNJ9 132 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.36□□□□□ -1.71
VPS35-207ENST00000568191 FAM221BA6H8Z2 402 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 MATN3O15232 486 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 COMTP21964 271 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 FLT3P36888 993 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 RRADP55042 308 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 HHEXQ03014 270 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 TMEM132BQ14DG7 1078 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 TRIM61Q5EBN2 209 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 PALM2Q8IXS6 379 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 GSTCDQ8NEC7 633 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 Q8TCH9 128 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 FAM89AQ96GI7 184 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 MRFAP1L1Q96HT8 127 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 GBP4Q96PP9 640 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 PTPN18Q99952 460 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 OR10A5Q9H207 317 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 SMURF1Q9HCE7 757 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 CD248Q9HCU0 757 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 UCKL1Q9NWZ5 548 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 Q9UFV3 132 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 COQ6Q9Y2Z9 468 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 ASB1Q9Y576 335 aa4.36□□□□□ -1.71
VPS35-207ENST00000568191 PRAMEF22A3QJZ6 481 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 KCNK3O14649 394 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 MAFGO15525 162 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 ARHGAP6O43182 974 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 KCNQ2O43526 872 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 CDC14BO60729 498 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 FZD7O75084 574 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 FSHBP01225 129 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 ZNF888P0CJ79 500 aaPredicted RBP4.35□□□□□ -1.71
VPS35-207ENST00000568191 ADCY8P40145 1251 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 SESN2P58004 480 aaPredicted RBP4.35□□□□□ -1.71
VPS35-207ENST00000568191 IL13RA1P78552 427 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 EIF4HQ15056 248 aaKnown RBP4.35□□□□□ -1.71
VPS35-207ENST00000568191 STILQ15468 1287 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 C2orf27AQ580R0 203 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 GRAMD4Q6IC98 578 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 TCTN3Q6NUS6 607 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 USP30Q70CQ3 517 aa4.35□□□□□ -1.71
VPS35-207ENST00000568191 POLNQ7Z5Q5 900 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms