RNA–Protein interactions for RNA: ENST00000564841.1

LINC00554-201, long intergenic non-protein coding RNA 554, humanhuman

BASIC

Gene LINC00554, Length 3,011 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00554-201ENST00000564841 GLIS3Q8NEA6 775 aa17.77■□□□□ 0.43
LINC00554-201ENST00000564841 CCDC47Q96A33 483 aaKnown RBP17.77■□□□□ 0.43
LINC00554-201ENST00000564841 MKNK2Q9HBH9 465 aa17.77■□□□□ 0.43
LINC00554-201ENST00000564841 SRRM3A6NNA2 597 aaPredicted RBP17.76■□□□□ 0.43
LINC00554-201ENST00000564841 VIMP08670 466 aaKnown RBP17.76■□□□□ 0.43
LINC00554-201ENST00000564841 COPB2P35606 906 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 MEI1Q5TIA1 1274 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 KIAA0895Q8NCT3 520 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 ZNF317Q96PQ6 595 aaPredicted RBP17.76■□□□□ 0.43
LINC00554-201ENST00000564841 PSMD1Q99460 953 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 SLC5A4Q9NY91 659 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 LAMB2P55268 1798 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 A0A087X0T9 212 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 TTI1O43156 1089 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 EVI5O60447 810 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 FAM228BP0C875 321 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 MYBP10242 640 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 GHRP10912 638 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 TNNC1P63316 161 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 SLC27A3Q5K4L6 730 aa17.76■□□□□ 0.43
LINC00554-201ENST00000564841 ADAT2Q7Z6V5 191 aaKnown RBP17.76■□□□□ 0.43
LINC00554-201ENST00000564841 PRMT1Q99873 361 aaKnown RBP17.76■□□□□ 0.43
LINC00554-201ENST00000564841 CPSF2Q9P2I0 782 aaKnown RBP17.76■□□□□ 0.43
LINC00554-201ENST00000564841 IGF2BP3O00425 579 aaKnown RBP eCLIP17.75■□□□□ 0.43
LINC00554-201ENST00000564841 LGR5O75473 907 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 PLCG1P19174 1290 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 IFI35P80217 286 aaPredicted RBP17.75■□□□□ 0.43
LINC00554-201ENST00000564841 BIRC3Q13489 604 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 HEATR3Q7Z4Q2 680 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 SLC17A8Q8NDX2 589 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 WDR66Q8TBY9 1149 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 DHTKD1Q96HY7 919 aaPredicted RBP17.75■□□□□ 0.43
LINC00554-201ENST00000564841 PIDD1Q9HB75 910 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 RBM28Q9NW13 759 aaKnown RBP17.75■□□□□ 0.43
LINC00554-201ENST00000564841 IRAK4Q9NWZ3 460 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 NOP53Q9NZM5 478 aaKnown RBP17.75■□□□□ 0.43
LINC00554-201ENST00000564841 STX8Q9UNK0 236 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 KRT16P08779 473 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 TFAP4Q01664 338 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 LRRC41Q15345 812 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 TBC1D16Q8TBP0 767 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 TRIM51Q9BSJ1 452 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 FAM129AQ9BZQ8 928 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 SCN7AQ01118 1682 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 CNTNAP5Q8WYK1 1306 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 MYH7BA7E2Y1 1941 aa17.75■□□□□ 0.43
LINC00554-201ENST00000564841 PAEPP09466 180 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 SCG2P13521 617 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 SCNN1DP51172 638 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 FIGNQ5HY92 759 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 SPTY2D1Q68D10 685 aaPredicted RBP17.74■□□□□ 0.43
LINC00554-201ENST00000564841 PDXDC1Q6P996 788 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 TRPM8Q7Z2W7 1104 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 BRIP1Q9BX63 1249 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 KCNMB3Q9NPA1 279 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 KBTBD4Q9NVX7 518 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 PNMA3Q9UL41 463 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 SNUPNO95149 360 aaKnown RBP17.74■□□□□ 0.43
LINC00554-201ENST00000564841 BTDP43251 543 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 TUBP50607 506 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 DTHD1Q6ZMT9 781 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 C3orf20Q8ND61 904 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 LRRC45Q96CN5 670 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 BATF3Q9NR55 127 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 NID2Q14112 1375 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 SBF2Q86WG5 1849 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 ANKRD33BA6NCL7 494 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 F8VZ95 297 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 SLCO1A2P46721 670 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 KCNMA1Q12791 1236 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 NBPF20Q3BBV1 942 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 CCDC38Q502W7 563 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 TMC3Q7Z5M5 1100 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 GOPCQ9HD26 462 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 NR2E1Q9Y466 385 aa17.74■□□□□ 0.43
LINC00554-201ENST00000564841 TAF1LQ8IZX4 1826 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 NQO1P15559 274 aaKnown RBP17.73■□□□□ 0.43
LINC00554-201ENST00000564841 LONP1P36776 959 aaKnown RBP17.73■□□□□ 0.43
LINC00554-201ENST00000564841 NCALDP61601 193 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 LRRC14Q15048 493 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 NAB2Q15742 525 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 TRIM9Q9C026 710 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 MLXIPLQ9NP71 852 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 ARAP2Q8WZ64 1704 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 PPEF1O14829 653 aaPredicted RBP17.73■□□□□ 0.43
LINC00554-201ENST00000564841 SLURP2P0DP57 97 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 RARAP10276 462 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 RNASELQ05823 741 aaKnown RBP17.73■□□□□ 0.43
LINC00554-201ENST00000564841 ANKRD20A2Q5SQ80 823 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 ANKRD20A1Q5TYW2 823 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 ANKRD20A3Q5VUR7 823 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 DYMQ7RTS9 669 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 PLCD4Q9BRC7 762 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 CCDC113Q9H0I3 377 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 ADAM7Q9H2U9 754 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 ECT2Q9H8V3 914 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 TMEM59LQ9UK28 342 aa17.73■□□□□ 0.43
LINC00554-201ENST00000564841 POLR2FP61218 127 aaKnown RBP17.72■□□□□ 0.43
LINC00554-201ENST00000564841 CRELD2Q6UXH1 353 aaPredicted RBP17.72■□□□□ 0.43
LINC00554-201ENST00000564841 RNF10Q8N5U6 811 aaKnown RBP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms