RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 MRPL38Q96DV4 380 aaKnown RBP19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 IL17RAQ96F46 866 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 TRPC6Q9Y210 931 aa19.59■□□□□ 0.73
VPS9D1-203ENST00000563798 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 IPO5O00410 1097 aaKnown RBP19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 ADAMTS3O15072 1205 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 UPP2O95045 317 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 PDIA3P30101 505 aaKnown RBP19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 SETQ01105 290 aaPredicted RBP19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 MTHFD1LQ6UB35 978 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 TMEM192Q8IY95 271 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 CRIPAKQ8N1N5 446 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 ATP8B4Q8TF62 1192 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 AGO3Q9H9G7 860 aaKnown RBP19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 ZSWIM6Q9HCJ5 1215 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 TBC1D22BQ9NU19 505 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 TRPV2Q9Y5S1 764 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 NCOR1O75376 2440 aa19.58■□□□□ 0.72
VPS9D1-203ENST00000563798 COL1A2P08123 1366 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 BDP1A6H8Y1 2624 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 C5orf67F2Z3F1 127 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 HBP1O60381 514 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 LINC00271P0C7V0 271 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 PTPROQ16827 1216 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 FAM160B1Q5W0V3 765 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 RUFY3Q7L099 469 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 BICD2Q8TD16 824 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 ZNF689Q96CS4 500 aaPredicted RBP19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 ZBTB10Q96DT7 871 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 FTHL17Q9BXU8 183 aa19.57■□□□□ 0.72
VPS9D1-203ENST00000563798 IGSF9BQ9UPX0 1349 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 RB1P06400 928 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 AKAP17AQ02040 695 aaKnown RBP19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 ZNF746Q6NUN9 644 aaPredicted RBP19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 MIS18BP1Q6P0N0 1132 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 CCDC60Q8IWA6 550 aaPredicted RBP19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 FIBCD1Q8N539 461 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 CCDC148Q8NFR7 591 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 TRAPPC12Q8WVT3 735 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 PHKBQ93100 1093 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 ZNF577Q9BSK1 485 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 CELF4Q9BZC1 486 aaKnown RBP19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 TM6SF1Q9BZW5 370 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 FAM49AQ9H0Q0 323 aaPredicted RBP19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 SH3GLB2Q9NR46 395 aa19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 MAFBQ9Y5Q3 323 aaPredicted RBP19.56■□□□□ 0.72
VPS9D1-203ENST00000563798 M0QZ92 97 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 DGKIO75912 1065 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 KLRC1P26715 233 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 CD52P31358 61 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 TTC3P53804 2025 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 GPM6BQ13491 265 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 ZNF484Q5JVG2 852 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 RTN4RL1Q86UN2 441 aaPredicted RBP19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 SMAP1Q8IYB5 467 aaPredicted RBP19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 LINC01599Q8WXQ3 324 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 CLP1Q92989 425 aaKnown RBP19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 LENG9Q96B70 501 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 ZNF302Q9NR11 478 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 RWDD3Q9Y3V2 267 aa19.55■□□□□ 0.72
VPS9D1-203ENST00000563798 ADGRA3Q8IWK6 1321 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 RALGAPA2Q2PPJ7 1873 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 ZBTB42B2RXF5 422 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 DDX39AO00148 427 aaKnown RBP19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 BACH1O14867 736 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 EDIL3O43854 480 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 ATP4AP20648 1035 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 KRT76Q01546 638 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 TOB2Q14106 344 aaPredicted RBP19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 COL19A1Q14993 1142 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 TIGD5Q53EQ6 642 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 SWSAP1Q6NVH7 229 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 KIAA0319LQ8IZA0 1049 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 FAM177A1Q8N128 213 aaPredicted RBP19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 NECAB3Q96P71 396 aaPredicted RBP19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 SLC26A6Q9BXS9 759 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 UBE2ZQ9H832 354 aaPredicted RBP19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 PADI3Q9ULW8 664 aa19.54■□□□□ 0.72
VPS9D1-203ENST00000563798 BMPR1AP36894 532 aa19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 USP11P51784 963 aa19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 LEXMQ3ZCV2 418 aa19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 PDXDC2PQ6P474 469 aa19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 BBXQ8WY36 941 aaPredicted RBP19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 ZNF274Q96GC6 653 aaPredicted RBP19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 LMAN2LQ9H0V9 348 aa19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 NCOA5Q9HCD5 579 aaKnown RBP19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 PCDHA10Q9Y5I2 948 aa19.53■□□□□ 0.72
VPS9D1-203ENST00000563798 CCT2P78371 535 aaKnown RBP19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 TMEM62Q0P6H9 643 aa19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 PAK2Q13177 524 aa19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 PRR16Q569H4 304 aa19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 NPAS4Q8IUM7 802 aa19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 RASGRP4Q8TDF6 673 aa19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 C11orf84Q9BUA3 381 aaPredicted RBP19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 TMX1Q9H3N1 280 aa19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 VPS54Q9P1Q0 977 aa19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 CYP46A1Q9Y6A2 500 aa19.52■□□□□ 0.72
VPS9D1-203ENST00000563798 NLRC5Q86WI3 1866 aa19.52■□□□□ 0.71
VPS9D1-203ENST00000563798 TCF20Q9UGU0 1960 aaKnown RBP19.52■□□□□ 0.71
VPS9D1-203ENST00000563798 C22orf31O95567 290 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms