RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ZNF484Q5JVG2 852 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 MTHFD1LQ6UB35 978 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 CCDC60Q8IWA6 550 aaPredicted RBP19.08■□□□□ 0.64
CLK3-210ENST00000563112 CKAP2LQ8IYA6 745 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 MICALL1Q8N3F8 863 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 NME8Q8N427 588 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 TBCKQ8TEA7 893 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 ATP8B4Q8TF62 1192 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 TRAPPC12Q8WVT3 735 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 TGS1Q96RS0 853 aaKnown RBP19.08■□□□□ 0.64
CLK3-210ENST00000563112 OSBPL7Q9BZF2 842 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 PCDHA10Q9Y5I2 948 aa19.08■□□□□ 0.64
CLK3-210ENST00000563112 COL1A2P08123 1366 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 SMIM35A0A1B0GVV1 85 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 PFKFB2O60825 505 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 POU3F3P20264 500 aaPredicted RBP19.07■□□□□ 0.64
CLK3-210ENST00000563112 KLRC1P26715 233 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 LPIN1Q14693 890 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 FBXO47Q5MNV8 452 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 DAGLBQ8NCG7 672 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 TOP1MTQ969P6 601 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 TPCN1Q9ULQ1 816 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 TRPV2Q9Y5S1 764 aa19.07■□□□□ 0.64
CLK3-210ENST00000563112 UNC80Q8N2C7 3258 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 LINC01553A4QN01 128 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 MSH4O15457 936 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 GAS7O60861 476 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 UPP2O95045 317 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 AK2P54819 239 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 ERVK-21P61565 698 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 HTRA4P83105 476 aaPredicted RBP19.06■□□□□ 0.64
CLK3-210ENST00000563112 TSHZ1Q6ZSZ6 1077 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 BBXQ8WY36 941 aaPredicted RBP19.06■□□□□ 0.64
CLK3-210ENST00000563112 LENG9Q96B70 501 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 ZBTB10Q96DT7 871 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 YME1L1Q96TA2 773 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 RIT2Q99578 217 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 MAFBQ9Y5Q3 323 aaPredicted RBP19.06■□□□□ 0.64
CLK3-210ENST00000563112 MTCH2Q9Y6C9 303 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 SQORQ9Y6N5 450 aa19.06■□□□□ 0.64
CLK3-210ENST00000563112 MYH9P35579 1960 aaKnown RBP19.06■□□□□ 0.64
CLK3-210ENST00000563112 STK36Q9NRP7 1315 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 PRUNE2Q8WUY3 3088 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.05■□□□□ 0.64
CLK3-210ENST00000563112 EPOPA6NHQ4 379 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 WDR64B1ANS9 1081 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 NONOQ15233 471 aaKnown RBP eCLIP19.05■□□□□ 0.64
CLK3-210ENST00000563112 KRT25Q7Z3Z0 450 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 WASF1Q92558 559 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 FAM167AQ96KS9 214 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 AIFM3Q96NN9 605 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 TEKT3Q9BXF9 490 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 CELF4Q9BZC1 486 aaKnown RBP19.05■□□□□ 0.64
CLK3-210ENST00000563112 THEGQ9P2T0 379 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 GABBR1Q9UBS5 961 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 MTUS1Q9ULD2 1270 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 CEP131Q9UPN4 1083 aa19.05■□□□□ 0.64
CLK3-210ENST00000563112 PRRC2BQ5JSZ5 2229 aaKnown RBP19.04■□□□□ 0.64
CLK3-210ENST00000563112 RBAK-RBAKDNI3L0D1 243 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 SFNP31947 248 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 TMEM62Q0P6H9 643 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 GRB10Q13322 594 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 Q4G0T1 1027 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 LRCH2Q5VUJ6 765 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 SYMPKQ92797 1274 aaKnown RBP19.04■□□□□ 0.64
CLK3-210ENST00000563112 SLC5A5Q92911 643 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 SAMD11Q96NU1 681 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 COL25A1Q9BXS0 654 aaPredicted RBP19.04■□□□□ 0.64
CLK3-210ENST00000563112 PRDM6Q9NQX0 595 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 DISC1Q9NRI5 854 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 LMCD1Q9NZU5 365 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 KCNJ14Q9UNX9 436 aa19.04■□□□□ 0.64
CLK3-210ENST00000563112 EYSQ5T1H1 3165 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 CYP3A7-CYP3A51PA0A087WV96 503 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 CCDC194A0A1B0GVG4 234 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 M0R2N6 131 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 ENPP3O14638 875 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 EDIL3O43854 480 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 ATP4AP20648 1035 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 CYP3A7P24462 503 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 CD52P31358 61 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 JAK3P52333 1124 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 SKIV2LQ15477 1246 aaKnown RBP19.03■□□□□ 0.64
CLK3-210ENST00000563112 MOXD1Q6UVY6 613 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 TRMT1LQ7Z2T5 733 aaKnown RBP19.03■□□□□ 0.64
CLK3-210ENST00000563112 SPRED2Q7Z698 418 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 SP7Q8TDD2 431 aaPredicted RBP19.03■□□□□ 0.64
CLK3-210ENST00000563112 ATXN2LQ8WWM7 1075 aaKnown RBP19.03■□□□□ 0.64
CLK3-210ENST00000563112 IL17RAQ96F46 866 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 PHF20Q9BVI0 1012 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 FTHL17Q9BXU8 183 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 NRBP2Q9NSY0 501 aa19.03■□□□□ 0.64
CLK3-210ENST00000563112 ORC3Q9UBD5 711 aaPredicted RBP19.03■□□□□ 0.64
CLK3-210ENST00000563112 KDM3AQ9Y4C1 1321 aa19.02■□□□□ 0.64
CLK3-210ENST00000563112 CHMP2AO43633 222 aa19.02■□□□□ 0.64
CLK3-210ENST00000563112 TDP2O95551 362 aa19.02■□□□□ 0.64
CLK3-210ENST00000563112 NEK4P51957 841 aa19.02■□□□□ 0.64
CLK3-210ENST00000563112 PAK2Q13177 524 aa19.02■□□□□ 0.64
CLK3-210ENST00000563112 TJAP1Q5JTD0 557 aa19.02■□□□□ 0.64
CLK3-210ENST00000563112 ODR4Q5SWX8 454 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms